############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r oligo -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data oligo ### ############################################################################## ############################################################################## * checking for file 'oligo/DESCRIPTION' ... OK * preparing 'oligo': * checking DESCRIPTION meta-information ... OK * cleaning src * running 'cleanup.win' * installing the package to build vignettes ----------------------------------- * installing *source* package 'oligo' ... ** this is package 'oligo' version '1.71.0' ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 13.3.0' gcc -I"E:/biocbuild/bbs-3.21-bioc/R/library/zlibbioc/include" -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/preprocessCore/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c DABG.c -o DABG.o gcc -I"E:/biocbuild/bbs-3.21-bioc/R/library/zlibbioc/include" -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/preprocessCore/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ParserGzXYS.c -o ParserGzXYS.o ParserGzXYS.c: In function 'gzxys_header_field': ParserGzXYS.c:62:11: warning: implicit declaration of function 'Calloc'; did you mean 'calloc'? [-Wimplicit-function-declaration] 62 | final = Calloc(strlen(result)+1, char); | ^~~~~~ | calloc ParserGzXYS.c:62:36: error: expected expression before 'char' 62 | final = Calloc(strlen(result)+1, char); | ^~~~ ParserGzXYS.c: In function 'R_read_gzxys_files': ParserGzXYS.c:147:9: warning: implicit declaration of function 'Free'; did you mean 'free'? [-Wimplicit-function-declaration] 147 | Free(d0); | ^~~~ | free make: *** [Makevars.win:11: ParserGzXYS.o] Error 1 ERROR: compilation failed for package 'oligo' * removing 'E:/biocbuild/bbs-3.21-bioc/tmpdir/RtmpyG8zw5/Rinstefc03a816559/oligo' ----------------------------------- ERROR: package installation failed