############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data netDx ### ############################################################################## ############################################################################## * checking for file ‘netDx/DESCRIPTION’ ... OK * preparing ‘netDx’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘ThreeWayClassifier.Rmd’ using rmarkdown Quitting from ThreeWayClassifier.Rmd:301-322 [unnamed-chunk-24] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `file()`: ! cannot open the connection --- Backtrace: x 1. +-base::suppressMessages(...) 2. | \-base::withCallingHandlers(...) 3. \-netDx::buildPredictor(...) 4. +-base::grepl(pattern = ",", readLines(tmp, n = 6)) 5. | \-base::is.factor(x) 6. \-base::readLines(tmp, n = 6) 7. \-base::file(con, "r") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'ThreeWayClassifier.Rmd' failed with diagnostics: cannot open the connection --- failed re-building 'ThreeWayClassifier.Rmd' SUMMARY: processing the following file failed: 'ThreeWayClassifier.Rmd' Error: Vignette re-building failed. Execution halted