############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data mitch ### ############################################################################## ############################################################################## * checking for file ‘mitch/DESCRIPTION’ ... OK * preparing ‘mitch’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘infiniumMethArrayWorkflow.Rmd’ using rmarkdown Quitting from lines 47-53 [lib] (infiniumMethArrayWorkflow.Rmd) Error: processing vignette 'infiniumMethArrayWorkflow.Rmd' failed with diagnostics: there is no package called 'IlluminaHumanMethylation450kanno.ilmn12.hg19' --- failed re-building ‘infiniumMethArrayWorkflow.Rmd’ --- re-building ‘mitchWorkflow.Rmd’ using rmarkdown trying URL 'https://reactome.org/download/current/ReactomePathways.gmt.zip' Content type 'application/zip' length 278258 bytes (271 KB) ================================================== downloaded 271 KB 2025-01-22 16:39:36.093 R[66483:360235611] XType: Using static font registry. --- finished re-building ‘mitchWorkflow.Rmd’ SUMMARY: processing the following file failed: ‘infiniumMethArrayWorkflow.Rmd’ Error: Vignette re-building failed. Execution halted