##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 glmGamPoi
###
##############################################################################
##############################################################################


* checking for file ‘glmGamPoi/DESCRIPTION’ ... OK
* preparing ‘glmGamPoi’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘glmGamPoi.Rmd’ using rmarkdown

Quitting from lines 83-91 [unnamed-chunk-5] (glmGamPoi.Rmd)
Error: processing vignette 'glmGamPoi.Rmd' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 'which': Failed to find a rowSums2() method for SVT_SparseMatrix objects.
--- failed re-building ‘glmGamPoi.Rmd’

--- re-building ‘pseudobulk.Rmd’ using rmarkdown

warning: solve(): system is singular (rcond: 1.52504e-16); attempting approx solution

warning: solve(): system is singular (rcond: 2.20634e-16); attempting approx solution

warning: solve(): system is singular (rcond: 3.13372e-17); attempting approx solution

warning: solve(): system is singular (rcond: 3.30132e-17); attempting approx solution

warning: solve(): system is singular (rcond: 3.362e-17); attempting approx solution

warning: solve(): system is singular (rcond: 3.38378e-17); attempting approx solution

warning: solve(): system is singular (rcond: 3.3915e-17); attempting approx solution

warning: solve(): system is singular (rcond: 3.39407e-17); attempting approx solution

warning: solve(): system is singular (rcond: 3.39501e-17); attempting approx solution

warning: solve(): system is singular (rcond: 3.39538e-17); attempting approx solution

warning: solve(): system is singular (rcond: 3.39554e-17); attempting approx solution

warning: solve(): system is singular (rcond: 3.39561e-17); attempting approx solution

warning: solve(): system is singular (rcond: 3.39564e-17); attempting approx solution

warning: solve(): system is singular (rcond: 8.50859e-17); attempting approx solution

warning: solve(): system is singular (rcond: 8.70721e-17); attempting approx solution

warning: solve(): system is singular (rcond: 8.89268e-17); attempting approx solution

warning: solve(): system is singular (rcond: 8.95944e-17); attempting approx solution

warning: solve(): system is singular (rcond: 8.98135e-17); attempting approx solution

warning: solve(): system is singular (rcond: 8.98845e-17); attempting approx solution

warning: solve(): system is singular (rcond: 8.99102e-17); attempting approx solution

warning: solve(): system is singular (rcond: 8.99205e-17); attempting approx solution

warning: solve(): system is singular (rcond: 8.99248e-17); attempting approx solution

warning: solve(): system is singular (rcond: 8.99268e-17); attempting approx solution

warning: solve(): system is singular (rcond: 8.99276e-17); attempting approx solution
--- finished re-building ‘pseudobulk.Rmd’

SUMMARY: processing the following file failed:
  ‘glmGamPoi.Rmd’

Error: Vignette re-building failed.
Execution halted