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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data gINTomics
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* checking for file ‘gINTomics/DESCRIPTION’ ... OK
* preparing ‘gINTomics’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘gINTomics.Rmd’ using rmarkdown
Warning: program compiled against libxml 212 using older 211
[2025-01-21 23:25:21] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2025-01-21 23:25:21] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-01-21 23:25:21] [INFO]    [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`.
[2025-01-21 23:25:21] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2025-01-21 23:25:21] [TRACE]   [OmnipathR] Cache is at `/home/biocbuild/.cache/OmnipathR`.
[2025-01-21 23:25:21] [TRACE]   [OmnipathR] Contains 1 files.
[2025-01-21 23:25:21] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2025-01-21 23:25:21] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2025-01-21 23:25:21] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-01-21 23:25:21] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`.
[2025-01-21 23:25:21] [TRACE]   [OmnipathR] Pandoc version: `2.12`.
[2025-01-21 23:25:21] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2025-01-21 23:25:21] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-01-21 23:25:21] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2025-01-21 23:25:21] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-01-21 23:25:21] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2025-01-21 23:25:21] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-01-21 23:25:21] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2025-01-21 23:25:21] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-01-21 23:25:21] [TRACE]   [OmnipathR] Cache locked: FALSE
[2025-01-21 23:25:55] [TRACE]   [OmnipathR] Arguments for OmniPath query: [organisms=9606,query_type=interactions,datasets=tf_target]
[2025-01-21 23:25:55] [INFO]    [OmnipathR] Loading database `Ensembl and OMA organism names`.
[2025-01-21 23:26:00] [FATAL]   [OmnipathR] The cache directory `/home/biocbuild/.cache/OmnipathR` is locked for longer than 5 seconds. If you keep experiencing this issue please call `omnipath_unlock_cache_db()`. 

Quitting from lines 139-142 [unnamed-chunk-9] (gINTomics.Rmd)
Error: processing vignette 'gINTomics.Rmd' failed with diagnostics:
ℹ In index: 1.
ℹ With name: hsa.
Caused by error in `map_int()`:
ℹ In index: 1.
Caused by error in `omnipath_locked_cache_error()`:
! The cache directory `/home/biocbuild/.cache/OmnipathR` is locked for longer than 5 seconds. If you keep experiencing this issue please call `omnipath_unlock_cache_db()`. 
--- failed re-building ‘gINTomics.Rmd’

SUMMARY: processing the following file failed:
  ‘gINTomics.Rmd’

Error: Vignette re-building failed.
Execution halted