############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data coMethDMR ### ############################################################################## ############################################################################## * checking for file ‘coMethDMR/DESCRIPTION’ ... OK * preparing ‘coMethDMR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘vin1_Introduction_to_coMethDMR_geneBasedPipeline.Rmd’ using rmarkdown 2025-01-22 15:51:55.146 R[32961:359563068] XType: Using static font registry. Quitting from lines 181-190 [AnnotateResults] (vin1_Introduction_to_coMethDMR_geneBasedPipeline.Rmd) Error: processing vignette 'vin1_Introduction_to_coMethDMR_geneBasedPipeline.Rmd' failed with diagnostics: there is no package called 'IlluminaHumanMethylation450kanno.ilmn12.hg19' --- failed re-building ‘vin1_Introduction_to_coMethDMR_geneBasedPipeline.Rmd’ --- re-building ‘vin2_BiocParallel_for_coMethDMR_geneBasedPipeline.Rmd’ using rmarkdown Quitting from lines 188-189 [unnamed-chunk-7] (vin2_BiocParallel_for_coMethDMR_geneBasedPipeline.Rmd) Error: processing vignette 'vin2_BiocParallel_for_coMethDMR_geneBasedPipeline.Rmd' failed with diagnostics: there is no package called 'IlluminaHumanMethylation450kanno.ilmn12.hg19' --- failed re-building ‘vin2_BiocParallel_for_coMethDMR_geneBasedPipeline.Rmd’ SUMMARY: processing the following files failed: ‘vin1_Introduction_to_coMethDMR_geneBasedPipeline.Rmd’ ‘vin2_BiocParallel_for_coMethDMR_geneBasedPipeline.Rmd’ Error: Vignette re-building failed. Execution halted