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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:SplineDV.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings SplineDV_0.99.2.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/SplineDV.Rcheck’
* using R Under development (unstable) (2025-01-20 r87609)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘SplineDV/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SplineDV’ version ‘0.99.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SplineDV’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
File
  LICENSE
is not mentioned in the DESCRIPTION file.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
DVPlot: no visible binding for global variable ‘mu1’
DVPlot: no visible binding for global variable ‘mu2’
HVGPlot: no visible binding for global variable ‘logMean’
splineDV: no visible binding for global variable ‘X_dvecx’
splineDV: no visible binding for global variable ‘X_dvecy’
splineDV: no visible binding for global variable ‘X_dvecz’
splineDV: no visible binding for global variable ‘Y_dvecx’
splineDV: no visible binding for global variable ‘Y_dvecy’
splineDV: no visible binding for global variable ‘Y_dvecz’
splineDV: no visible binding for global variable ‘dist1’
splineDV: no visible binding for global variable ‘dist2’
splineDV: no visible binding for global variable ‘vectorDist’
splineDV: no visible binding for global variable ‘Z’
splineDV: no visible binding for global variable ‘Pval’
splineDV: no visible binding for global variable ‘genes’
splineDV: no visible binding for global variable ‘mu1’
splineDV: no visible binding for global variable ‘mu2’
splineDV: no visible binding for global variable ‘CV1’
splineDV: no visible binding for global variable ‘CV2’
splineDV: no visible binding for global variable ‘drop1’
splineDV: no visible binding for global variable ‘drop2’
splineDV: no visible binding for global variable ‘X_splinex’
splineDV: no visible binding for global variable ‘X_spliney’
splineDV: no visible binding for global variable ‘X_splinez’
splineDV: no visible binding for global variable ‘Y_splinex’
splineDV: no visible binding for global variable ‘Y_spliney’
splineDV: no visible binding for global variable ‘Y_splinez’
splineDV: no visible binding for global variable ‘Direction’
splineHVG: no visible binding for global variable ‘logMean’
splineHVG: no visible binding for global variable ‘logCV’
splineHVG: no visible binding for global variable ‘spliney’
splineHVG: no visible binding for global variable ‘Distance’
Undefined global functions or variables:
  CV1 CV2 Direction Distance Pval X_dvecx X_dvecy X_dvecz X_splinex
  X_spliney X_splinez Y_dvecx Y_dvecy Y_dvecz Y_splinex Y_spliney
  Y_splinez Z dist1 dist2 drop1 drop2 genes logCV logMean mu1 mu2
  spliney vectorDist
Consider adding
  importFrom("stats", "drop1")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  Performing normalization...
  Computing distances...
  HVG computed
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 3 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_DV.R:8:3'): DV works with matrix ─────────────────────────────
  ncol(res) (`actual`) not identical to 19L (`expected`).
  
    `actual`: 18
  `expected`: 19
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 3 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.21-bioc/meat/SplineDV.Rcheck/00check.log’
for details.