############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data STRINGdb ### ############################################################################## ############################################################################## * checking for file ‘STRINGdb/DESCRIPTION’ ... OK * preparing ‘STRINGdb’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘STRINGdb.Rnw’ using Sweave trying URL 'https://stringdb-downloads.org/download/protein.aliases.v12.0/9606.protein.aliases.v12.0.txt.gz' Content type 'application/octet-stream' length 19777800 bytes (18.9 MB) ================================================== downloaded 18.9 MB trying URL 'https://stringdb-downloads.org/download/protein.info.v12.0/9606.protein.info.v12.0.txt.gz' Content type 'application/octet-stream' length 1970090 bytes (1.9 MB) ================================================== downloaded 1.9 MB trying URL 'https://stringdb-downloads.org/download/protein.links.v12.0/9606.protein.links.v12.0.txt.gz' Content type 'application/octet-stream' length 83164437 bytes (79.3 MB) ====================================== downloaded 61.1 MB Warning in download.file(urlStr, temp) : downloaded length 64044794 != reported length 83164437 Warning in download.file(urlStr, temp) : URL 'https://stringdb-downloads.org/download/protein.links.v12.0/9606.protein.links.v12.0.txt.gz': Timeout of 600 seconds was reached Error: processing vignette 'STRINGdb.Rnw' failed with diagnostics: chunk 15 (label = clustering1) Error in download.file(urlStr, temp) : download from 'https://stringdb-downloads.org/download/protein.links.v12.0/9606.protein.links.v12.0.txt.gz' failed --- failed re-building ‘STRINGdb.Rnw’ SUMMARY: processing the following file failed: ‘STRINGdb.Rnw’ Error: Vignette re-building failed. Execution halted