############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf PIUMA.buildbin-libdir && mkdir PIUMA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh PIUMA_1.1.1.tar.gz /Library/Frameworks/R.framework/Resources/bin/R PIUMA.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=PIUMA.buildbin-libdir PIUMA_1.1.1.tar.gz' >>>>>>> * installing *source* package ‘PIUMA’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading in method for ‘getOrigData’ with signature ‘x="TDAobj"’: no definition for class “TDAobj” in method for ‘setOrigData’ with signature ‘x="TDAobj"’: no definition for class “TDAobj” in method for ‘getScaledData’ with signature ‘x="TDAobj"’: no definition for class “TDAobj” in method for ‘setScaledData’ with signature ‘x="TDAobj"’: no definition for class “TDAobj” in method for ‘getOutcomeFact’ with signature ‘x="TDAobj"’: no definition for class “TDAobj” in method for ‘setOutcomeFact’ with signature ‘x="TDAobj"’: no definition for class “TDAobj” in method for ‘getOutcome’ with signature ‘x="TDAobj"’: no definition for class “TDAobj” in method for ‘setOutcome’ with signature ‘x="TDAobj"’: no definition for class “TDAobj” in method for ‘getComp’ with signature ‘x="TDAobj"’: no definition for class “TDAobj” in method for ‘setComp’ with signature ‘x="TDAobj"’: no definition for class “TDAobj” in method for ‘getDistMat’ with signature ‘x="TDAobj"’: no definition for class “TDAobj” in method for ‘setDistMat’ with signature ‘x="TDAobj"’: no definition for class “TDAobj” in method for ‘getDfMapper’ with signature ‘x="TDAobj"’: no definition for class “TDAobj” in method for ‘setDfMapper’ with signature ‘x="TDAobj"’: no definition for class “TDAobj” in method for ‘getJacc’ with signature ‘x="TDAobj"’: no definition for class “TDAobj” in method for ‘setJacc’ with signature ‘x="TDAobj"’: no definition for class “TDAobj” in method for ‘getNodeDataMat’ with signature ‘x="TDAobj"’: no definition for class “TDAobj” in method for ‘setNodeDataMat’ with signature ‘x="TDAobj"’: no definition for class “TDAobj” ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PIUMA)