############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data PICS ### ############################################################################## ############################################################################## * checking for file ‘PICS/DESCRIPTION’ ... OK * preparing ‘PICS’: * checking DESCRIPTION meta-information ... OK * cleaning src * running ‘cleanup’ * installing the package to build vignettes ----------------------------------- * installing *source* package ‘PICS’ ... ** this is package ‘PICS’ version ‘2.51.0’ ** using staged installation checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for GSL... yes configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pics.c -o pics.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c segment.c -o segment.o segment.c: In function ‘segReads’: segment.c:147:22: warning: implicit declaration of function ‘Calloc’; did you mean ‘calloc’? [-Wimplicit-function-declaration] 147 | scoreRegionF=(int*)Calloc((M-m)/(2*INTEGER_VALUE(width)), int); | ^~~~~~ | calloc segment.c:147:61: error: expected expression before ‘int’ 147 | scoreRegionF=(int*)Calloc((M-m)/(2*INTEGER_VALUE(width)), int); | ^~~ segment.c:148:61: error: expected expression before ‘int’ 148 | scoreRegionR=(int*)Calloc((M-m)/(2*INTEGER_VALUE(width)), int); | ^~~ make: *** [/home/biocbuild/bbs-3.21-bioc/R/etc/Makeconf:195: segment.o] Error 1 ERROR: compilation failed for package ‘PICS’ * removing ‘/tmp/Rtmp8A8oCM/Rinstaf1f1b8102a3/PICS’ ----------------------------------- ERROR: package installation failed