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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD check --install=check:Moonlight2R.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings Moonlight2R_1.5.4.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/Moonlight2R.Rcheck’
* using R Under development (unstable) (2025-02-19 r87757)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Moonlight2R/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Moonlight2R’ version ‘1.5.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Imports includes 35 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable.  Move as many as possible to Suggests and
use conditionally.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Moonlight2R’ can be installed ... WARNING
Found the following significant warnings:
  Warning: 'rgl.init' failed, will use the null device.
  Warning: no DISPLAY variable so Tk is not available
See ‘/home/biocbuild/bbs-3.21-bioc/meat/Moonlight2R.Rcheck/00install.out’ for details.
* checking installed package size ... INFO
  installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data   3.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
TFinfluence: no visible binding for global variable ‘HGVSp_Short’
TFinfluence : <anonymous>: no visible binding for global variable
  ‘mutation’
TFinfluence : <anonymous>: no visible binding for global variable
  ‘stab_class’
TFinfluence: no visible binding for global variable ‘GENE’
TFinfluence: no visible binding for global variable ‘Target’
TFinfluence: no visible binding for global variable ‘TF’
TFinfluence: no visible binding for global variable ‘mutation’
TFinfluence: no visible binding for global variable ‘protein’
TFinfluence: no visible binding for global variable ‘tf_mutation’
TFinfluence: no visible binding for global variable ‘InteractionType’
TFinfluence: no visible binding for global variable ‘stab_class’
TFinfluence: no visible binding for global variable ‘logFC_target’
loadMAVISp: no visible binding for global variable ‘filepath’
Undefined global functions or variables:
  GENE HGVSp_Short InteractionType TF Target filepath logFC_target
  mutation protein stab_class tf_mutation
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
GMA        106.552  7.566 171.494
plotGMA      5.892  0.529   6.897
plotDMA      4.425  0.563   5.757
LiftMAF      3.669  0.532   9.212
getDataGEO   2.714  0.350  16.059
GLS          1.047  0.731   5.962
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.21-bioc/meat/Moonlight2R.Rcheck/00check.log’
for details.