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### Running command:
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###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:HiContacts.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings HiContacts_1.9.0.tar.gz
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* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/HiContacts.Rcheck'
* using R Under development (unstable) (2024-10-26 r87273 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'HiContacts/DESCRIPTION' ... OK
* this is package 'HiContacts' version '1.9.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'HiContacts' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'HiContacts-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: distanceLaw
> ### Title: Compute the law of distance-dependent contact frequency, a.k.a.
> ###   P(s)
> ### Aliases: distanceLaw Ps distanceLaw,GInteractions,missing-method
> ###   distanceLaw,HiCExperiment,missing-method
> ###   distanceLaw,PairsFile,missing-method
> ###   distanceLaw,PairsFile,GRanges-method localDistanceLaw
> ###   distanceLaw,HiCExperiment,GRanges-method
> 
> ### ** Examples
> 
> contacts_yeast <- contacts_yeast()
Warning in .Internal(lapply(X, FUN)) :
  closing unused connection 3 (E:/biocbuild/ExperimentHub_cache/1d7a433a86cb7_7752)
see ?HiContactsData and browseVignettes('HiContactsData') for documentation
loading from cache
Error in h(simpleError(msg, call)) : 
  error in evaluating the argument 'con' in selecting a method for function 'import': Provided file is not a .cool/.mcool file.
  Aborting now.
Calls: contacts_yeast ... import -> FileForFormat -> <Anonymous> -> .check_cool_file
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
Contacts 6.24   2.07   11.28
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
    3. │ ├─BiocIO::import(fpath, "II", resolution = 16000, format = "cool")
    4. │ └─BiocIO::import(fpath, "II", resolution = 16000, format = "cool")
    5. │   ├─BiocIO::import(FileForFormat(con, format), ...)
    6. │   └─BiocIO::FileForFormat(con, format)
    7. │     └─get(constructorName, ns)(path)
    8. │       └─HiCExperiment:::.check_cool_file(path)
    9. │         └─base::stop("Provided file is not a .cool/.mcool file.\n  Aborting now.")
   10. ├─base::.handleSimpleError(...)
   11. │ └─base (local) h(simpleError(msg, call))
   12. └─base::.handleSimpleError(...)
   13.   └─base (local) h(simpleError(msg, call))
  
  [ FAIL 11 | WARN 0 | SKIP 0 | PASS 1 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs
See
  'E:/biocbuild/bbs-3.21-bioc/meat/HiContacts.Rcheck/00check.log'
for details.