############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data HiContacts ### ############################################################################## ############################################################################## * checking for file ‘HiContacts/DESCRIPTION’ ... OK * preparing ‘HiContacts’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘HiContacts.Rmd’ using rmarkdown Warning in for (i in seq_along(slots)) { : closing unused connection 4 (/home/biocbuild/.cache/R/ExperimentHub/1751a96897fa50_7751) Quitting from HiContacts.Rmd:169-177 [unnamed-chunk-12] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `loadNamespace()`: ! there is no package called 'terra' --- Backtrace: ▆ 1. ├─HiContacts::despeckle(hic_1) 2. └─base::loadNamespace(x) 3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 4. └─base (local) withOneRestart(expr, restarts[[1L]]) 5. └─base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'HiContacts.Rmd' failed with diagnostics: there is no package called 'terra' --- failed re-building ‘HiContacts.Rmd’ SUMMARY: processing the following file failed: ‘HiContacts.Rmd’ Error: Vignette re-building failed. Execution halted