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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data HiCDCPlus
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* checking for file ‘HiCDCPlus/DESCRIPTION’ ... OK
* preparing ‘HiCDCPlus’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘HiCDCPlus.Rmd’ using rmarkdown
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-01-23T16:30:35,755]  [Globals.java:138] [main]  Development mode is enabled
Using 1 CPU thread(s) for primary task
Using 10 CPU thread(s) for secondary task
Not including fragment map
Start preprocess
Writing header
Writing body
java.lang.NumberFormatException: For input string: "score"
	at java.base/jdk.internal.math.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:2054)
	at java.base/jdk.internal.math.FloatingDecimal.parseFloat(FloatingDecimal.java:122)
	at java.base/java.lang.Float.parseFloat(Float.java:556)
	at juicebox.tools.utils.original.mnditerator.MNDLineParser.updatePairScoreIfNeeded(MNDLineParser.java:88)
	at juicebox.tools.utils.original.mnditerator.MNDFileParser.parseShortFormat(MNDFileParser.java:105)
	at juicebox.tools.utils.original.mnditerator.MNDFileParser.parse(MNDFileParser.java:87)
	at juicebox.tools.utils.original.mnditerator.GenericPairIterator.advance(GenericPairIterator.java:56)
	at juicebox.tools.utils.original.mnditerator.AsciiPairIterator.<init>(AsciiPairIterator.java:55)
	at juicebox.tools.utils.original.mnditerator.PairIterator.getIterator(PairIterator.java:54)
	at juicebox.tools.utils.original.Preprocessor.computeWholeGenomeMatrix(Preprocessor.java:583)
	at juicebox.tools.utils.original.Preprocessor.writeBody(Preprocessor.java:674)
	at juicebox.tools.utils.original.Preprocessor.preprocess(Preprocessor.java:436)
	at juicebox.tools.clt.old.PreProcessing.run(PreProcessing.java:165)
	at juicebox.tools.HiCTools.main(HiCTools.java:94)

Quitting from lines 209-222 [quickStart_diff2] (HiCDCPlus.Rmd)
Error: processing vignette 'HiCDCPlus.Rmd' failed with diagnostics:
there is no package called 'DESeq2'
--- failed re-building ‘HiCDCPlus.Rmd’

SUMMARY: processing the following file failed:
  ‘HiCDCPlus.Rmd’

Error: Vignette re-building failed.
Execution halted