############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Harshlight ### ############################################################################## ############################################################################## * checking for file ‘Harshlight/DESCRIPTION’ ... OK * preparing ‘Harshlight’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes ----------------------------------- * installing *source* package ‘Harshlight’ ... ** this is package ‘Harshlight’ version ‘1.79.0’ ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ gcc -std=gnu2x -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Harshlight.c -o Harshlight.o Harshlight.c: In function ‘report_overall_header’: Harshlight.c:1471:26: warning: unknown conversion type character ‘)’ in format [-Wformat=] 1471 | PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 215, *diff_br); | ^ Harshlight.c:1474:26: warning: unknown conversion type character ‘)’ in format [-Wformat=] 1474 | PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 230, *diff_dr); | ^ Harshlight.c: At top level: Harshlight.c:1504:6: error: conflicting types for ‘chip_overall_header’; have ‘void(int *, char **)’ 1504 | void chip_overall_header(int *chip_number, char **chip_name){ | ^~~~~~~~~~~~~~~~~~~ Harshlight.c:93:6: note: previous declaration of ‘chip_overall_header’ with type ‘void(void)’ 93 | void chip_overall_header(); //general header for a chip | ^~~~~~~~~~~~~~~~~~~ Harshlight.c: In function ‘chip_summary’: Harshlight.c:1532:107: warning: unknown conversion type character ‘)’ in format [-Wformat=] 1532 | PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var); | ^ Harshlight.c:1542:26: warning: unknown conversion type character ‘)’ in format [-Wformat=] 1542 | PP "%d %d moveto (%.2f%) show\n", x_val_1, y_text - 100, *perc_c); | ^ Harshlight.c:1543:26: warning: unknown conversion type character ‘)’ in format [-Wformat=] 1543 | PP "%d %d moveto (%.2f%) show\n", x_val_2, y_text - 100, *perc_d); | ^ Harshlight.c: In function ‘extended_stop’: Harshlight.c:1555:107: warning: unknown conversion type character ‘)’ in format [-Wformat=] 1555 | PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var); | ^ make: *** [/home/biocbuild/bbs-3.21-bioc/R/etc/Makeconf:201: Harshlight.o] Error 1 ERROR: compilation failed for package ‘Harshlight’ * removing ‘/tmp/Rtmp8kPbyo/Rinst33c026267e819/Harshlight’ ----------------------------------- ERROR: package installation failed