############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Glimma ### ############################################################################## ############################################################################## * checking for file ‘Glimma/DESCRIPTION’ ... OK * preparing ‘Glimma’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘DESeq2.Rmd’ using rmarkdown --- finished re-building ‘DESeq2.Rmd’ --- re-building ‘limma_edger.Rmd’ using rmarkdown --- finished re-building ‘limma_edger.Rmd’ --- re-building ‘single_cell_edger.Rmd’ using rmarkdown Quitting from lines 42-49 [unnamed-chunk-2] (single_cell_edger.Rmd) Error: processing vignette 'single_cell_edger.Rmd' failed with diagnostics: failed to load resource name: AH73905 title: Ensembl 97 EnsDb for Mus musculus reason: file is not a database --- failed re-building ‘single_cell_edger.Rmd’ SUMMARY: processing the following file failed: ‘single_cell_edger.Rmd’ Error: Vignette re-building failed. Execution halted