############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data DESpace ### ############################################################################## ############################################################################## * checking for file ‘DESpace/DESCRIPTION’ ... OK * preparing ‘DESpace’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘DSP.Rmd’ using rmarkdown Quitting from DSP.Rmd:302-324 [unnamed-chunk-7] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `reconstructShapeDensityImage()`: ! unused arguments (mark_select = cluster_use[clus], image_col = NULL, image_id = NULL) --- Backtrace: ▆ 1. ├─BiocGenerics::lapply(...) 2. └─base::lapply(...) 3. └─global FUN(X[[i]], ...) 4. └─DESpace::FeaturePlot(...) 5. └─DESpace:::.geneExprsPlot(...) 6. ├─BiocGenerics::lapply(...) 7. └─base::lapply(...) 8. └─DESpace (local) FUN(X[[i]], ...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'DSP.Rmd' failed with diagnostics: unused arguments (mark_select = cluster_use[clus], image_col = NULL, image_id = NULL) --- failed re-building ‘DSP.Rmd’ --- re-building ‘SVG.Rmd’ using rmarkdown --- finished re-building ‘SVG.Rmd’ SUMMARY: processing the following file failed: ‘DSP.Rmd’ Error: Vignette re-building failed. Execution halted