############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:BiocBook.install-out.txt --library=C:\Users\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings BiocBook_1.3.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.20-bioc/meat/BiocBook.Rcheck' * using R version 4.4.1 (2024-06-14 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'BiocBook/DESCRIPTION' ... OK * this is package 'BiocBook' version '1.3.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'BiocBook' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ERROR Running examples in 'BiocBook-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: BiocBook > ### Title: Handling BiocBook directories > ### Aliases: BiocBook init quick_init BiocBook-class releases chapters > ### path,BiocBook-method releases,BiocBook-method > ### chapters,BiocBook-method show,BiocBook-method > > ### ** Examples > > ## In practice, you should not use `.local` argument. > unique_id <- sample(c(LETTERS, 0:9), 8) |> paste(collapse = '') > bookname <- paste(Sys.info()[['sysname']], unique_id, sep = '.') > init(bookname, .local = TRUE) ══ Running preflight checklist ═════════════════════════════════════════════════ ⠙ Checking that no folder named `Windows.DA7WKNR0` already exists Error in `.preflight_checks()`: ! A folder named Windows.DA7WKNR0 already exists. Backtrace: ▆ 1. └─BiocBook::init(bookname, .local = TRUE) 2. └─BiocBook:::.preflight_checks(new_package, skip_availability, .local) 3. └─cli::cli_abort("A folder named {new_package} already exists.") 4. └─rlang::abort(...) Execution halted * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 ERROR See 'C:/Users/biocbuild/bbs-3.20-bioc/meat/BiocBook.Rcheck/00check.log' for details.