############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BindingSiteFinder ### ############################################################################## ############################################################################## * checking for file ‘BindingSiteFinder/DESCRIPTION’ ... OK * preparing ‘BindingSiteFinder’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘vignette.Rmd’ using rmarkdown Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH 2025-01-23 15:48:26.219 R[35648:980014831] XType: com.apple.fonts is not accessible. 2025-01-23 15:48:26.219 R[35648:980014831] XType: XTFontStaticRegistry is enabled. Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Quitting from lines 880-882 [unnamed-chunk-63] (vignette.Rmd) Error: processing vignette 'vignette.Rmd' failed with diagnostics: there is no package called 'DESeq2' --- failed re-building ‘vignette.Rmd’ SUMMARY: processing the following file failed: ‘vignette.Rmd’ Error: Vignette re-building failed. Execution halted