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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationForge
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* checking for file ‘AnnotationForge/DESCRIPTION’ ... OK
* preparing ‘AnnotationForge’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘makeProbePackage.Rmd’ using rmarkdown

Quitting from lines 39-51 [makeprobepackage] (makeProbePackage.Rmd)
Error: processing vignette 'makeProbePackage.Rmd' failed with diagnostics:
there is no package called 'affy'
--- failed re-building ‘makeProbePackage.Rmd’

--- re-building ‘MakingNewAnnotationPackages.Rnw’ using knitr
Warning: closing unused connection 4 (/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpvP8vWM/Rinst538b43872c0c/AnnotationForge/extdata/HG-U95Av2_probe_tab.gz)
trying URL 'http://rest.uniprot.org/uniprotkb/search?query=P13368%20OR%20Q6GZX4&format=xml'
Content type 'application/xml' length 45602 bytes (44 KB)
==================================================
downloaded 44 KB

--- finished re-building ‘MakingNewAnnotationPackages.Rnw’

--- re-building ‘MakingNewOrganismPackages.Rmd’ using knitr
--- finished re-building ‘MakingNewOrganismPackages.Rmd’

--- re-building ‘SQLForge.Rnw’ using knitr
--- finished re-building ‘SQLForge.Rnw’

SUMMARY: processing the following file failed:
  ‘makeProbePackage.Rmd’

Error: Vignette re-building failed.
Execution halted