############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r AnnotationDbi -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data AnnotationDbi ### ############################################################################## ############################################################################## * checking for file 'AnnotationDbi/DESCRIPTION' ... OK * preparing 'AnnotationDbi': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'AnnotationDbi.Rnw' using knitr texify: major issue: User/administrator updates are out-of-sync. Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", : running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "AnnotationDbi.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/bibtex/bst"' had status 1 Error: processing vignette 'AnnotationDbi.Rnw' failed with diagnostics: running 'texi2dvi' on 'AnnotationDbi.tex' failed LaTeX errors: ignettes/AnnotationDbi.tex:141: Package xcolor Error: Undefined color `fgcolor' . See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:206: Package xcolor Error: Undefined color `fgcolor' . See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:218: Package xcolor Error: Undefined color `fgcolor' . See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:258: Package xcolor Error: Undefined color `fgcolor' . See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:292: Package xcolor Error: Undefined color `fgcolor' . See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:303: Package xcolor Error: Undefined color `fgcolor' . See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:325: Package xcolor Error: Undefined color `fgcolor' . See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:356: Package xcolor Error: Undefined color `fgcolor' . See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:383: Package xcolor Error: Undefined color `fgcolor' . See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:408: Package xcolor Error: Undefined color `fgcolor' . See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:427: Package xcolor Error: Undefined color `fgcolor' . See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:442: Package xcolor Error: Undefined color `fgcolor' . See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:487: Package xcolor Error: Undefined color `fgcolor' . See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:525: Package xcolor Error: Undefined color `fgcolor' . See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:558: Package xcolor Error: Undefined color `fgcolor' . See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:593: Package xcolor Error: Undefined color `fgcolor' . See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:615: Package xcolor Error: Undefined color `fgcolor' . See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:652: Package xcolor Error: Undefined color `fgcolor' . See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:689: Package xcolor Error: Undefined color `fgcolor' . See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:714: Package xcolor Error: Undefined color `fgcolor' . See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:1390: Package xcolor Error: Undefined color `fgcolor '. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:1412: Package xcolor Error: Undefined color `fgcolor '. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:1429: Package xcolor Error: Undefined color `fgcolor '. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:1446: Package xcolor Error: Undefined color `fgcolor '. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:1463: Package xcolor Error: Undefined color `fgcolor '. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:1480: Package xcolor Error: Undefined color `fgcolor '. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:1495: Package xcolor Error: Undefined color `fgcolor '. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:1521: Package xcolor Error: Undefined color `fgcolor '. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:1547: Package xcolor Error: Undefined color `fgcolor '. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:1574: Package xcolor Error: Undefined color `fgcolor '. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:1661: Package xcolor Error: Undefined color `fgcolor '. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:1673: Package xcolor Error: Undefined color `fgcolor '. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:1683: Package xcolor Error: Undefined color `fgcolor '. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:1708: Package xcolor Error: Undefined color `fgcolor '. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:1746: Package xcolor Error: Undefined color `fgcolor '. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:1760: Package xcolor Error: Undefined color `fgcolor '. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:1770: Package xcolor Error: Undefined color `fgcolor '. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:1793: Package xcolor Error: Undefined color `fgcolor '. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:1813: Package xcolor Error: Undefined color `fgcolor '. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:1848: Package xcolor Error: Undefined color `fgcolor '. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/AnnotationDbi.tex:1865: Package xcolor Error: Undefined color `fgcolor '. See the xcolor package documentation for explanation. Type H for immediate help. --- failed re-building 'AnnotationDbi.Rnw' --- re-building 'IntroToAnnotationPackages.Rnw' using knitr texify: major issue: User/administrator updates are out-of-sync. Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", : running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "IntroToAnnotationPackages.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/bibtex/bst"' had status 1 Error: processing vignette 'IntroToAnnotationPackages.Rnw' failed with diagnostics: running 'texi2dvi' on 'IntroToAnnotationPackages.tex' failed LaTeX errors: ignettes/IntroToAnnotationPackages.tex:155: Package xcolor Error: Undefined col or `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/IntroToAnnotationPackages.tex:168: Package xcolor Error: Undefined col or `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/IntroToAnnotationPackages.tex:192: Package xcolor Error: Undefined col or `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/IntroToAnnotationPackages.tex:241: Package xcolor Error: Undefined col or `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/IntroToAnnotationPackages.tex:263: Package xcolor Error: Undefined col or `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/IntroToAnnotationPackages.tex:277: Package xcolor Error: Undefined col or `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/IntroToAnnotationPackages.tex:297: Package xcolor Error: Undefined col or `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/IntroToAnnotationPackages.tex:314: Package xcolor Error: Undefined col or `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/IntroToAnnotationPackages.tex:350: Package xcolor Error: Undefined col or `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/IntroToAnnotationPackages.tex:413: Package xcolor Error: Undefined col or `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/IntroToAnnotationPackages.tex:430: Package xcolor Error: Undefined col or `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/IntroToAnnotationPackages.tex:437: Package xcolor Error: Undefined col or `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/IntroToAnnotationPackages.tex:478: Package xcolor Error: Undefined col or `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/IntroToAnnotationPackages.tex:502: Package xcolor Error: Undefined col or `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/IntroToAnnotationPackages.tex:542: Package xcolor Error: Undefined col or `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/IntroToAnnotationPackages.tex:587: Package xcolor Error: Undefined col or `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/IntroToAnnotationPackages.tex:692: Package xcolor Error: Undefined col or `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/IntroToAnnotationPackages.tex:810: Package xcolor Error: Undefined col or `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ignettes/IntroToAnnotationPackages.tex:849: Package xcolor Error: Undefined col or `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. --- failed re-building 'IntroToAnnotationPackages.Rnw' SUMMARY: processing the following files failed: 'AnnotationDbi.Rnw' 'IntroToAnnotationPackages.Rnw' Error: Vignette re-building failed. Execution halted