############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data AneuFinder ### ############################################################################## ############################################################################## * checking for file ‘AneuFinder/DESCRIPTION’ ... OK * preparing ‘AneuFinder’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes ----------------------------------- * installing *source* package ‘AneuFinder’ ... ** this is package ‘AneuFinder’ version ‘1.35.0’ ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c R_interface.cpp -o R_interface.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -DR_NO_REMAP -c densities.cpp -o densities.o densities.cpp: In constructor ‘Poisson::Poisson(int*, int, double)’: densities.cpp:122:66: error: expected primary-expression before ‘double’ 122 | this->lxfactorials = (double*) Calloc(max_obs+1, double); | ^~~~~~ densities.cpp:122:48: error: ‘Calloc’ was not declared in this scope; did you mean ‘calloc’? 122 | this->lxfactorials = (double*) Calloc(max_obs+1, double); | ^~~~~~ | calloc densities.cpp: In destructor ‘virtual Poisson::~Poisson()’: densities.cpp:137:17: error: ‘Free’ was not declared in this scope; did you mean ‘free’? 137 | Free(this->lxfactorials); | ^~~~ | free densities.cpp: In constructor ‘NegativeBinomial::NegativeBinomial(int*, int, double, double)’: densities.cpp:344:66: error: expected primary-expression before ‘double’ 344 | this->lxfactorials = (double*) Calloc(max_obs+1, double); | ^~~~~~ densities.cpp:344:48: error: ‘Calloc’ was not declared in this scope; did you mean ‘calloc’? 344 | this->lxfactorials = (double*) Calloc(max_obs+1, double); | ^~~~~~ | calloc densities.cpp: In destructor ‘virtual NegativeBinomial::~NegativeBinomial()’: densities.cpp:359:17: error: ‘Free’ was not declared in this scope; did you mean ‘free’? 359 | Free(this->lxfactorials); | ^~~~ | free make: *** [/home/biocbuild/bbs-3.21-bioc/R/etc/Makeconf:202: densities.o] Error 1 ERROR: compilation failed for package ‘AneuFinder’ * removing ‘/tmp/RtmpigJXd3/Rinst2f6ca54b38a0fa/AneuFinder’ ----------------------------------- ERROR: package installation failed