David Mosen-Ansorena
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/seqCNA |
| Branch: master |
| Last Commit: 3d27c63 |
| Last Changed Date: 2018-10-30 11:54:31 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 13:28:22 -0400 (Tue, 09 Apr 2019).
| Package 1463/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| seqCNA 1.29.0 David Mosen-Ansorena
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | [ OK ] |
| Package: seqCNA |
| Version: 1.29.0 |
| Command: rm -rf seqCNA.buildbin-libdir && mkdir seqCNA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh seqCNA_1.29.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R seqCNA.buildbin-libdir |
| StartedAt: 2019-04-09 06:28:26 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 06:29:37 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 71.0 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: seqCNA_1.29.0.tgz |
| PackageFileSize: 1.285 MiB |
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### Running command:
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### rm -rf seqCNA.buildbin-libdir && mkdir seqCNA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh seqCNA_1.29.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R seqCNA.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=seqCNA.buildbin-libdir seqCNA_1.29.0.tar.gz'
>>>>>>>
* installing *source* package ‘seqCNA’ ...
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c seqCNA.cpp -o seqCNA.o
seqCNA.cpp:107:15: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare]
if (index<0) goto next;
˜˜˜˜˜^˜
1 warning generated.
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o seqCNA.so seqCNA.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/seqCNA.buildbin-libdir/seqCNA/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (seqCNA)
>>>>>>>
>>>>>>> FIXING LINKS FOR seqCNA.buildbin-libdir/seqCNA/libs//seqCNA.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "seqCNA.buildbin-libdir/seqCNA/libs//seqCNA.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "seqCNA.buildbin-libdir/seqCNA/libs//seqCNA.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "seqCNA.buildbin-libdir/seqCNA/libs//seqCNA.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "seqCNA.buildbin-libdir/seqCNA/libs//seqCNA.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "seqCNA.buildbin-libdir/seqCNA/libs//seqCNA.so"