Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 11:59:38 -0400 (Tue, 09 Apr 2019).
Package 1390/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
rqubic 1.29.0 Jitao David Zhang
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: rqubic |
Version: 1.29.0 |
Command: rm -rf rqubic.buildbin-libdir && mkdir rqubic.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rqubic.buildbin-libdir rqubic_1.29.0.tar.gz |
StartedAt: 2019-04-09 08:52:42 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 08:53:17 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 34.8 seconds |
RetCode: 0 |
Status: OK |
PackageFile: rqubic_1.29.0.zip |
PackageFileSize: 448.2 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf rqubic.buildbin-libdir && mkdir rqubic.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rqubic.buildbin-libdir rqubic_1.29.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'rqubic' ... ** libs C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c bicluster.c -o bicluster.o bicluster.c: In function 'seed_intersect_r': bicluster.c:354:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (flag=ss) (*m_cnt)++; ^ C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c discretize.c -o discretize.o In file included from discretize.c:9:0: rqubic.h:60:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable] static const char *EDGELIST_ATT_NAME="edgelist"; ^ rqubic.h:61:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable] static const char *MINCOL_ATT_NAME="minimumCol"; ^ C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c fib.c -o fib.o In file included from fib.c:35:0: rqubic.h:60:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable] static const char *EDGELIST_ATT_NAME="edgelist"; ^ rqubic.h:61:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable] static const char *MINCOL_ATT_NAME="minimumCol"; ^ C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c graph.c -o graph.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c rqubic.c -o rqubic.o In file included from rqubic.c:5:0: rqubic.h:60:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable] static const char *EDGELIST_ATT_NAME="edgelist"; ^ rqubic.h:61:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable] static const char *MINCOL_ATT_NAME="minimumCol"; ^ C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o rqubic.dll tmp.def bicluster.o discretize.o fib.o graph.o rqubic.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/rqubic.buildbin-libdir/00LOCK-rqubic/00new/rqubic/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rqubic' finding HTML links ... done QUBICBiclusterSet-class html finding level-2 HTML links ... done combineBiclusts-methods html discretize html eSetDimName html fcFilter-methods html fcFilter html features-methods html generateSeeds-methods html parseQubicBlocks html quBicluster html readBiclusterResults html rqubic-package html writeQubicInputFile html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'rqubic' ... ** libs C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c bicluster.c -o bicluster.o bicluster.c: In function 'seed_intersect_r': bicluster.c:354:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (flag=ss) (*m_cnt)++; ^ C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c discretize.c -o discretize.o In file included from discretize.c:9:0: rqubic.h:60:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable] static const char *EDGELIST_ATT_NAME="edgelist"; ^ rqubic.h:61:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable] static const char *MINCOL_ATT_NAME="minimumCol"; ^ C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c fib.c -o fib.o In file included from fib.c:35:0: rqubic.h:60:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable] static const char *EDGELIST_ATT_NAME="edgelist"; ^ rqubic.h:61:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable] static const char *MINCOL_ATT_NAME="minimumCol"; ^ C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c graph.c -o graph.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c rqubic.c -o rqubic.o In file included from rqubic.c:5:0: rqubic.h:60:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable] static const char *EDGELIST_ATT_NAME="edgelist"; ^ rqubic.h:61:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable] static const char *MINCOL_ATT_NAME="minimumCol"; ^ C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o rqubic.dll tmp.def bicluster.o discretize.o fib.o graph.o rqubic.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/rqubic.buildbin-libdir/rqubic/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'rqubic' as rqubic_1.29.0.zip * DONE (rqubic)