Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 13:34:57 -0400 (Tue, 09 Apr 2019).
Package 797/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ImpulseDE2 1.7.1 David S Fischer
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
Package: ImpulseDE2 |
Version: 1.7.1 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ImpulseDE2.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ImpulseDE2_1.7.1.tar.gz |
StartedAt: 2019-04-09 01:37:57 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 01:45:22 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 444.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ImpulseDE2.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ImpulseDE2.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ImpulseDE2_1.7.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/ImpulseDE2.Rcheck’ * using R Under development (unstable) (2018-11-27 r75683) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ImpulseDE2/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ImpulseDE2’ version ‘1.7.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ImpulseDE2’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE plotGenes: no visible global function definition for ‘error’ plotGenes: no visible binding for global variable ‘normCounts’ plotGenes: no visible binding for global variable ‘Condition’ plotGenes: no visible binding for global variable ‘Batch’ plotGenes: no visible binding for global variable ‘value’ plotGenes: no visible binding for global variable ‘BatchFit’ Undefined global functions or variables: Batch BatchFit Condition error normCounts value * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed updateDEAnalysis 41.471 0.472 42.239 plotHeatmap 41.468 0.250 42.054 plotGenes 35.140 0.170 35.612 fitSigmoidModels 23.507 0.253 23.964 get_accessors 21.626 0.120 21.986 runImpulseDE2 21.017 0.238 21.458 writeReportToFile 20.296 0.183 20.596 list_accession 19.132 0.116 19.389 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.9-bioc/meat/ImpulseDE2.Rcheck/00check.log’ for details.
ImpulseDE2.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ImpulseDE2 ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘ImpulseDE2’ ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (ImpulseDE2)
ImpulseDE2.Rcheck/ImpulseDE2-Ex.timings
name | user | system | elapsed | |
computeNormConst | 0.304 | 0.023 | 0.331 | |
fitSigmoidModels | 23.507 | 0.253 | 23.964 | |
get_accessors | 21.626 | 0.120 | 21.986 | |
list_accession | 19.132 | 0.116 | 19.389 | |
plotGenes | 35.140 | 0.170 | 35.612 | |
plotHeatmap | 41.468 | 0.250 | 42.054 | |
runImpulseDE2 | 21.017 | 0.238 | 21.458 | |
simulateDataSetImpulseDE2 | 0.031 | 0.001 | 0.035 | |
updateDEAnalysis | 41.471 | 0.472 | 42.239 | |
writeReportToFile | 20.296 | 0.183 | 20.596 | |