Stefano Berri
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/CNAnorm |
| Branch: master |
| Last Commit: ef18867 |
| Last Changed Date: 2018-10-30 11:54:29 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 11:59:46 -0400 (Tue, 09 Apr 2019).
| Package 296/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CNAnorm 1.29.0 Stefano Berri
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: CNAnorm |
| Version: 1.29.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/CNAnorm_1.29.0.tar.gz && rm -rf CNAnorm.buildbin-libdir && mkdir CNAnorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNAnorm.buildbin-libdir CNAnorm_1.29.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL CNAnorm_1.29.0.zip && rm CNAnorm_1.29.0.tar.gz CNAnorm_1.29.0.zip |
| StartedAt: 2019-04-08 18:27:32 -0400 (Mon, 08 Apr 2019) |
| EndedAt: 2019-04-08 18:28:07 -0400 (Mon, 08 Apr 2019) |
| EllapsedTime: 35.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/CNAnorm_1.29.0.tar.gz && rm -rf CNAnorm.buildbin-libdir && mkdir CNAnorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNAnorm.buildbin-libdir CNAnorm_1.29.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL CNAnorm_1.29.0.zip && rm CNAnorm_1.29.0.tar.gz CNAnorm_1.29.0.zip
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install for i386
* installing *source* package 'CNAnorm' ...
** libs
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=generic -c daxpy.f -o daxpy.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=generic -c ddot.f -o ddot.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=generic -c dgbfa.f -o dgbfa.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=generic -c dgbsl.f -o dgbsl.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=generic -c dscal.f -o dscal.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=generic -c dsmooth.f -o dsmooth.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=generic -c idamax.f -o idamax.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o CNAnorm.dll tmp.def daxpy.o ddot.o dgbfa.o dgbsl.o dscal.o dsmooth.o idamax.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -lgfortran -lm -lquadmath -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/CNAnorm.buildbin-libdir/00LOCK-CNAnorm/00new/CNAnorm/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CNAnorm'
finding HTML links ... done
CN html
CNAnorm-class html
DerivData-class html
InData-class html
LS041 html
Params-class html
addDNACopy-methods html
addSmooth-methods html
chrsAndpos-methods html
data-hg19_hs_ideogr html
dataFrame2object html
discreteNorm-methods html
exportTable-method html
gPar html
gcNorm-methods html
peakPloidy html
plotGenome-methods html
plotPeaks-methods html
ratio-methods html
suggValid-methods html
validation-methods html
workflowWrapper html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'CNAnorm' ...
** libs
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=generic -c daxpy.f -o daxpy.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=generic -c ddot.f -o ddot.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=generic -c dgbfa.f -o dgbfa.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=generic -c dgbsl.f -o dgbsl.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=generic -c dscal.f -o dscal.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=generic -c dsmooth.f -o dsmooth.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=generic -c idamax.f -o idamax.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o CNAnorm.dll tmp.def daxpy.o ddot.o dgbfa.o dgbsl.o dscal.o dsmooth.o idamax.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -lgfortran -lm -lquadmath -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/CNAnorm.buildbin-libdir/CNAnorm/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CNAnorm' as CNAnorm_1.29.0.zip
* DONE (CNAnorm)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'CNAnorm' successfully unpacked and MD5 sums checked