Package: randPack

Version: 1.26.0

Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:randPack.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings randPack_1.26.0.tar.gz

StartedAt: 2018-10-17 04:14:49 -0400 (Wed, 17 Oct 2018)

EndedAt: 2018-10-17 04:15:33 -0400 (Wed, 17 Oct 2018)

EllapsedTime: 44.0 seconds

RetCode: 0

Status:  OK

CheckDir: randPack.Rcheck

Warnings: 0

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### Running command:
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###   C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:randPack.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings randPack_1.26.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/randPack.Rcheck'
* using R version 3.5.1 Patched (2018-07-24 r75005)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'randPack/DESCRIPTION' ... OK
* this is package 'randPack' version '1.26.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'randPack' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Non-standard license specification:
  Artistic 2.0
Standardizable: TRUE
Standardized license specification:
  Artistic-2.0
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.checkRand2CT : <anonymous>: no visible global function definition for
  'is'
.newEBC: no visible global function definition for 'is'
.newPBlock: no visible global function definition for 'is'
.newUrn: no visible global function definition for 'is'
addPData: no visible global function definition for 'is'
createTrial: no visible global function definition for 'new'
getCovariates : <anonymous> : <anonymous>: no visible binding for
  global variable 'slot'
getEnrolleeInfo: no visible global function definition for 'is'
getTreatment: no visible global function definition for 'is'
makeRandomizer: no visible global function definition for 'is'
makeRandomizer: no visible global function definition for 'new'
trtAlloc: no visible global function definition for 'is'
validPID: no visible global function definition for 'is'
show,ClinicalTrial: no visible global function definition for 'show'
Undefined global functions or variables:
  is new show slot
Consider adding
  importFrom("methods", "is", "new", "show", "slot")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... NOTE
prepare_Rd: getTreatment.Rd:20-21: Dropping empty section \details
prepare_Rd: getTreatment.Rd:22-23: Dropping empty section \value
prepare_Rd: makeRandomizer.Rd:40-41: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  'C:/Users/biocbuild/bbs-3.7-bioc/meat/randPack.Rcheck/00check.log'
for details.

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/randPack_1.26.0.tar.gz && rm -rf randPack.buildbin-libdir && mkdir randPack.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=randPack.buildbin-libdir randPack_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL randPack_1.26.0.zip && rm randPack_1.26.0.tar.gz randPack_1.26.0.zip
###
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install for i386

* installing *source* package 'randPack' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'randPack'
    finding HTML links ... done
    CT1                                     html  
    ClinicalExperiment-class                html  
    ClinicalTrial-class                     html  
    PatientData-class                       html  
    PatientID-class                         html  
    Randomizer-class                        html  
    SampleData                              html  
    createTrial                             html  
    getEnrolleeInfo                         html  
    getTreatment                            html  
    makeRandomizer                          html  
    minimizePocSim                          html  
    simPats                                 html  
    treatmentNames                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'randPack' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'randPack' as randPack_1.26.0.zip
* DONE (randPack)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'randPack' successfully unpacked and MD5 sums checked
In R CMD INSTALL