Stefano de Pretis
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/LowMACA |
| Branch: RELEASE_3_7 |
| Last Commit: c9c3a67 |
| Last Changed Date: 2018-04-30 10:35:36 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:27:23 -0400 (Wed, 17 Oct 2018).
| Package 801/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| LowMACA 1.12.0 Stefano de Pretis
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: LowMACA |
| Version: 1.12.0 |
| Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:LowMACA.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings LowMACA_1.12.0.tar.gz |
| StartedAt: 2018-10-16 01:33:26 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 01:46:18 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 771.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: LowMACA.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:LowMACA.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings LowMACA_1.12.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.7-bioc/meat/LowMACA.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘LowMACA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘LowMACA’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘LowMACA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
allPfamAnalysis 131.372 8.332 139.744
lfmSingleSequence 68.916 4.372 73.634
LowMACA-class 10.012 2.016 63.831
setup 9.736 1.048 201.255
LowMACA-package 7.376 1.640 33.063
lmPlotSingleSequence 4.680 2.012 6.920
alignSequences 5.272 0.684 18.375
getMutations 1.064 0.240 47.558
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
LowMACA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL LowMACA ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’ * installing *source* package ‘LowMACA’ ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded Checking if clustalo is in the PATH... Checking clustalo Version... Checking perl installation... Checking perl modules XML::Simple and LWP... * DONE (LowMACA)
LowMACA.Rcheck/LowMACA-Ex.timings
| name | user | system | elapsed | |
| BLOSUM62 | 0.008 | 0.000 | 0.009 | |
| LowMACA-class | 10.012 | 2.016 | 63.831 | |
| LowMACA-package | 7.376 | 1.640 | 33.063 | |
| LowMACA_AML | 0.036 | 0.000 | 0.038 | |
| alignSequences | 5.272 | 0.684 | 18.375 | |
| allPfamAnalysis | 131.372 | 8.332 | 139.744 | |
| bpAll | 0.732 | 0.008 | 0.743 | |
| entropy | 0.704 | 0.000 | 0.706 | |
| getMutations | 1.064 | 0.240 | 47.558 | |
| lfm | 1.424 | 0.044 | 1.468 | |
| lfmSingleSequence | 68.916 | 4.372 | 73.634 | |
| lmAlignment | 0.040 | 0.000 | 0.041 | |
| lmEntropy | 0.712 | 0.000 | 0.710 | |
| lmMutations | 0.036 | 0.000 | 0.036 | |
| lmObj | 0.076 | 0.004 | 0.080 | |
| lmParams | 0.504 | 0.152 | 0.678 | |
| lmPlot | 1.296 | 0.076 | 1.374 | |
| lmPlotSingleSequence | 4.680 | 2.012 | 6.920 | |
| mapMutations | 0.752 | 0.004 | 0.755 | |
| newLowMACA | 2.736 | 0.060 | 2.798 | |
| nullProfile | 0.756 | 0.028 | 0.785 | |
| parallelize | 0.508 | 0.000 | 0.510 | |
| protter | 0.728 | 0.004 | 4.673 | |
| setup | 9.736 | 1.048 | 201.255 | |
| showTumorType | 0.052 | 0.072 | 0.407 | |