Michael Lawrence
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/VariantTools |
| Branch: RELEASE_3_6 |
| Last Commit: 88453a2 |
| Last Changed Date: 2017-10-30 12:39:54 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:22:13 -0400 (Thu, 12 Apr 2018).
| Package 1445/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| VariantTools 1.20.0 Michael Lawrence
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | WARNINGS | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: VariantTools |
| Version: 1.20.0 |
| Command: cd VariantTools.buildbin-libdir/VariantTools && zip -r ../../VariantTools_1.20.0.zip . & cd ../.. |
| StartedAt: 2018-04-12 05:07:38 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 05:08:09 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 31.1 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: VariantTools_1.20.0.zip |
| PackageFileSize: 12.3 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd VariantTools.buildbin-libdir/VariantTools && zip -r ../../VariantTools_1.20.0.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: data/ (372 bytes security) (stored 0%) adding: data/vignette.rda (332 bytes security) (deflated 0%) adding: DESCRIPTION (332 bytes security) (deflated 39%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/fig/ (372 bytes security) (stored 0%) adding: doc/fig/bar-caller-freq-summary-dbSNP-count-all.pdf (332 bytes security) (deflated 9%) adding: doc/fig/bar-fdr-cov-bin-merged-all.pdf (332 bytes security) (deflated 9%) adding: doc/fig/bar-fnr-cov-bin-merged-all.pdf (332 bytes security) (deflated 9%) adding: doc/fig/boxplot-altFraction.pdf (332 bytes security) (deflated 8%) adding: doc/fig/boxplot-expected-obs-freq-source-merged-vt.pdf (332 bytes security) (deflated 0%) adding: doc/fig/boxplot-obs-freq-sample-ceu-all.pdf (332 bytes security) (deflated 0%) adding: doc/fig/density-altFraction.pdf (332 bytes security) (deflated 8%) adding: doc/fig/dot-percent-recovered-caller-merged-20-all.pdf (332 bytes security) (deflated 11%) adding: doc/fig/errors.pdf (332 bytes security) (deflated 5%) adding: doc/fig/hist-fdr-rep-count-all.pdf (332 bytes security) (deflated 11%) adding: doc/fig/igv_high_cov_neg.png (332 bytes security) (deflated 25%) adding: doc/fig/mix.pdf (332 bytes security) (deflated 17%) adding: doc/fig/post-filters.pdf (332 bytes security) (deflated 5%) adding: doc/fig/variant-calling-filters.pdf (332 bytes security) (deflated 4%) adding: doc/fig/VariantCallingProcess.pdf (332 bytes security) (deflated 3%) adding: doc/fig/workflow.pdf (332 bytes security) (deflated 3%) adding: doc/index.html (332 bytes security) (deflated 64%) adding: doc/tutorial.org (332 bytes security) (deflated 67%) adding: doc/tutorial.pdf (332 bytes security) (deflated 1%) adding: doc/VariantTools.pdf (332 bytes security) (deflated 7%) adding: doc/VariantTools.R (332 bytes security) (deflated 82%) adding: doc/VariantTools.Rnw (332 bytes security) (deflated 63%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 75%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: help/VariantTools.rdb (332 bytes security) (deflated 1%) adding: help/VariantTools.rdx (332 bytes security) (stored 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 80%) adding: html/annnotateWithControlDepth.html (332 bytes security) (deflated 59%) adding: html/callGenotypes.html (332 bytes security) (deflated 60%) adding: html/callSampleSpecificVariants.html (332 bytes security) (deflated 65%) adding: html/callVariants.html (332 bytes security) (deflated 63%) adding: html/callWildtype.html (332 bytes security) (deflated 59%) adding: html/concordance.html (332 bytes security) (deflated 60%) adding: html/extractCoverageForPositions.html (332 bytes security) (deflated 52%) adding: html/FilterConstructors.html (332 bytes security) (deflated 61%) adding: html/matchVariants.html (332 bytes security) (deflated 54%) adding: html/pileupVariants.html (332 bytes security) (deflated 58%) adding: html/postFilterVariants.html (332 bytes security) (deflated 59%) adding: html/qaVariants.html (332 bytes security) (deflated 58%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/tallyVariants.html (332 bytes security) (deflated 64%) adding: html/variantGR2Vcf.html (332 bytes security) (deflated 58%) adding: html/vignette.html (332 bytes security) (deflated 54%) adding: INDEX (332 bytes security) (deflated 59%) adding: MD5 (332 bytes security) (deflated 47%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/data.rds (332 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (stored 0%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 57%) adding: NEWS (332 bytes security) (deflated 56%) adding: R/ (372 bytes security) (stored 0%) adding: R/VariantTools (332 bytes security) (deflated 41%) adding: R/VariantTools.rdb (332 bytes security) (deflated 30%) adding: R/VariantTools.rdx (332 bytes security) (stored 0%) adding: unitTests/ (372 bytes security) (stored 0%) adding: unitTests/test_calculateConcordanceMatrix.R (332 bytes security) (deflated 57%) adding: unitTests/test_idVerify.R (332 bytes security) (deflated 67%) adding: unitTests/test_variantConcordance.R (332 bytes security) (deflated 53%) adding: vcf/ (372 bytes security) (stored 0%) adding: vcf/header.csv (332 bytes security) (deflated 25%)