Hendrik Treutler
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/DiffLogo |
| Branch: RELEASE_3_6 |
| Last Commit: 2caa81e |
| Last Changed Date: 2017-10-30 12:40:54 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:26:51 -0400 (Thu, 12 Apr 2018).
| Package 366/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| DiffLogo 2.2.0 Hendrik Treutler
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: DiffLogo |
| Version: 2.2.0 |
| Command: rm -rf DiffLogo.buildbin-libdir DiffLogo.Rcheck && mkdir DiffLogo.buildbin-libdir DiffLogo.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DiffLogo.buildbin-libdir DiffLogo_2.2.0.tar.gz >DiffLogo.Rcheck\00install.out 2>&1 && cp DiffLogo.Rcheck\00install.out DiffLogo-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=DiffLogo.buildbin-libdir --install="check:DiffLogo-install.out" --force-multiarch --no-vignettes --timings DiffLogo_2.2.0.tar.gz |
| StartedAt: 2018-04-11 23:32:08 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 23:33:08 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 59.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: DiffLogo.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf DiffLogo.buildbin-libdir DiffLogo.Rcheck && mkdir DiffLogo.buildbin-libdir DiffLogo.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DiffLogo.buildbin-libdir DiffLogo_2.2.0.tar.gz >DiffLogo.Rcheck\00install.out 2>&1 && cp DiffLogo.Rcheck\00install.out DiffLogo-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=DiffLogo.buildbin-libdir --install="check:DiffLogo-install.out" --force-multiarch --no-vignettes --timings DiffLogo_2.2.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/DiffLogo.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'DiffLogo/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'DiffLogo' version '2.2.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'DiffLogo' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
DiffLogo.Rcheck/00install.out
install for i386
* installing *source* package 'DiffLogo' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'DiffLogo'
finding HTML links ... done
ASN html
Alphabet html
DNA html
FULL_ALPHABET html
RNA html
alignPwmSets html
baseDistributionPwm html
calculatePvalue html
createDiffLogoObject html
diffLogo html
diffLogoFromPwm html
diffLogoTable html
diffLogoTableConfiguration html
differenceOfICs html
drawDiffLogoTable html
enrichDiffLogoObjectWithPvalues html
enrichDiffLogoTableWithPvalues html
extendPwmsFromAlignmentVector html
getAlphabetFromCharacters html
getAlphabetFromSequences html
getPwmFromAlignment html
getPwmFromAlignmentFile html
getPwmFromFastaFile html
getPwmFromFile html
getPwmFromHomerFile html
getPwmFromPfmOrJasparFile html
getPwmFromPwmFile html
getSequencesFromAlignmentFile html
getSequencesFromFastaFile html
informationContent html
localPwmAlignment html
lossOfAbsICDifferences html
multipleLocalPwmsAlignment html
normalizePWM html
normalizedDifferenceOfProbabilities html
prepareDiffLogoTable html
probabilities html
pwmDivergence html
pwmsDistanceMatrix html
reverseAlignmentVector html
seqLogo html
shannonDivergence html
sumOfAbsICDifferences html
sumOfAbsProbabilityDifferences html
sumProbabilities html
switchDirection html
twoSetsAveragePwmDivergenceFromAlignmentVector
html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'DiffLogo' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DiffLogo' as DiffLogo_2.2.0.zip
* DONE (DiffLogo)
In R CMD INSTALL
In R CMD INSTALL
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DiffLogo.Rcheck/tests_i386/testthat.Rout R version 3.4.4 (2018-03-15) -- "Someone to Lean On" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > > proc.time() user system elapsed 0.15 0.01 0.17 |
DiffLogo.Rcheck/tests_x64/testthat.Rout R version 3.4.4 (2018-03-15) -- "Someone to Lean On" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > > proc.time() user system elapsed 0.15 0.03 0.17 |
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DiffLogo.Rcheck/examples_i386/DiffLogo-Ex.timings
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DiffLogo.Rcheck/examples_x64/DiffLogo-Ex.timings
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