BioC 3.5: CHECK report for sscu on tokay2

Package: sscu

Version: 2.6.0

Command: rm -rf sscu.buildbin-libdir sscu.Rcheck && mkdir sscu.buildbin-libdir sscu.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=sscu.buildbin-libdir sscu_2.6.0.tar.gz >sscu.Rcheck\00install.out 2>&1 && cp sscu.Rcheck\00install.out sscu-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=sscu.buildbin-libdir --install="check:sscu-install.out" --force-multiarch --no-vignettes --timings sscu_2.6.0.tar.gz

StartedAt: 2017-08-16 03:07:34 -0400 (Wed, 16 Aug 2017)

EndedAt: 2017-08-16 03:10:33 -0400 (Wed, 16 Aug 2017)

EllapsedTime: 178.6 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: sscu.Rcheck

Warnings: 1

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### Running command:
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###   rm -rf sscu.buildbin-libdir sscu.Rcheck && mkdir sscu.buildbin-libdir sscu.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=sscu.buildbin-libdir sscu_2.6.0.tar.gz >sscu.Rcheck\00install.out 2>&1 && cp sscu.Rcheck\00install.out sscu-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=sscu.buildbin-libdir --install="check:sscu-install.out" --force-multiarch --no-vignettes --timings sscu_2.6.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/sscu.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'sscu/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'sscu' version '2.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'sscu' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
  'sscu.Rmd'
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
op_corre_CodonW  13.37   0.08   13.46
op_corre_NCprime 11.75   0.01   11.76
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
op_corre_NCprime 15.39   0.03   15.42
op_corre_CodonW  13.97   0.00   13.97
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  'C:/Users/biocbuild/bbs-3.5-bioc/meat/sscu.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'sscu' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'sscu' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sscu' as sscu_2.6.0.zip
* DONE (sscu)

name	user	system	elapsed
akashi_test	0.02	0.00	0.02
genomic_gc3	0.61	0.03	0.64
low_frequency_op	0.99	0.02	1.00
op_corre_CodonW	13.37	0.08	13.46
op_corre_NCprime	11.75	0.01	11.76
op_highly	0.84	0.00	0.85
op_highly_stats	0.93	0.00	0.92
s_index	0.4	0.0	0.4

name	user	system	elapsed
akashi_test	0.01	0.00	0.02
genomic_gc3	0.76	0.07	0.83
low_frequency_op	1.36	0.00	1.36
op_corre_CodonW	13.97	0.00	13.97
op_corre_NCprime	15.39	0.03	15.42
op_highly	0.89	0.02	0.91
op_highly_stats	0.92	0.02	0.94
s_index	0.63	0.03	0.65