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BioC 3.5: INSTALL report for SeqArray on oaxaca

This page was generated on 2017-03-04 16:45:18 -0500 (Sat, 04 Mar 2017).

Package 1159/1339HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SeqArray 1.15.3
Xiuwen Zheng
Snapshot Date: 2017-03-03 17:15:47 -0500 (Fri, 03 Mar 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/SeqArray
Last Changed Rev: 126700 / Revision: 127142
Last Changed Date: 2017-02-11 19:35:53 -0500 (Sat, 11 Feb 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
toluca2 Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64 [ OK ] OK  OK  OK 

Summary

Package: SeqArray
Version: 1.15.3
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL SeqArray
StartedAt: 2017-03-03 15:30:45 -0800 (Fri, 03 Mar 2017)
EndedAt: 2017-03-03 15:31:48 -0800 (Fri, 03 Mar 2017)
EllapsedTime: 63.1 seconds
RetCode: 0
Status:  OK 

Command output

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###
### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL SeqArray
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library’
* installing *source* package ‘SeqArray’ ...
** libs
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/gdsfmt/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c ConvGDS2VCF.cpp -o ConvGDS2VCF.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/gdsfmt/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c ConvToGDS.cpp -o ConvToGDS.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/gdsfmt/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c ConvVCF2GDS.cpp -o ConvVCF2GDS.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/gdsfmt/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c FileMerge.cpp -o FileMerge.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/gdsfmt/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c GetData.cpp -o GetData.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/gdsfmt/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c Index.cpp -o Index.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/gdsfmt/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c LinkSNPRelate.cpp -o LinkSNPRelate.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/gdsfmt/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c Methods.cpp -o Methods.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/gdsfmt/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c R_SeqArray.c -o R_SeqArray.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/gdsfmt/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c ReadBySample.cpp -o ReadBySample.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/gdsfmt/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c ReadByVariant.cpp -o ReadByVariant.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/gdsfmt/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c SeqArray.cpp -o SeqArray.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/gdsfmt/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c pkg_test.cpp -o pkg_test.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/gdsfmt/include" -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c vectorization.c -o vectorization.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SeqArray.so ConvGDS2VCF.o ConvToGDS.o ConvVCF2GDS.o FileMerge.o GetData.o Index.o LinkSNPRelate.o Methods.o R_SeqArray.o ReadBySample.o ReadByVariant.o SeqArray.o pkg_test.o vectorization.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.4/Resources/library/SeqArray/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (SeqArray)