CellNOptR 1.21.0
T.Cokelaer
| Snapshot Date: 2017-03-03 17:15:47 -0500 (Fri, 03 Mar 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CellNOptR | | Last Changed Rev: 123157 / Revision: 127142 | | Last Changed Date: 2016-10-28 13:56:24 -0400 (Fri, 28 Oct 2016) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |
| toluca2 | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | [ OK ] | |
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### Running command:
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### rm -rf CellNOptR.buildbin-libdir && mkdir CellNOptR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CellNOptR_1.21.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CellNOptR.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CellNOptR.buildbin-libdir CellNOptR_1.21.0.tar.gz'
>>>>>>>
* installing *source* package ‘CellNOptR’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I./include -fPIC -Wall -mtune=core2 -g -O2 -c getFit.c -o getFit.o
getFit.c:40:6: warning: unused variable 'or_max' [-Wunused-variable]
int or_max = 0;
^
getFit.c:39:6: warning: unused variable 'curr_max' [-Wunused-variable]
int curr_max = 0;
^
getFit.c:47:6: warning: unused variable 'nReacs' [-Wunused-variable]
int nReacs = INTEGER(nReacs_in)[0];
^
getFit.c:41:6: warning: unused variable 'selection' [-Wunused-variable]
int selection[40];
^
getFit.c:42:6: warning: unused variable 'selCounter' [-Wunused-variable]
int selCounter = 0;
^
5 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I./include -fPIC -Wall -mtune=core2 -g -O2 -c simulatorT1.c -o simulatorT1.o
simulatorT1.c:285:28: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
if((track_cond == nCond)) {
˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
simulatorT1.c:285:28: note: remove extraneous parentheses around the comparison to silence this warning
if((track_cond == nCond)) {
˜ ^ ˜
simulatorT1.c:285:28: note: use '=' to turn this equality comparison into an assignment
if((track_cond == nCond)) {
^˜
=
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I./include -fPIC -Wall -mtune=core2 -g -O2 -c simulatorTN.c -o simulatorTN.o
simulatorTN.c:303:24: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
if((track_cond == nCond)) {
˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
simulatorTN.c:303:24: note: remove extraneous parentheses around the comparison to silence this warning
if((track_cond == nCond)) {
˜ ^ ˜
simulatorTN.c:303:24: note: use '=' to turn this equality comparison into an assignment
if((track_cond == nCond)) {
^˜
=
simulatorTN.c:501:28: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
if((track_cond == nCond)) {
˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
simulatorTN.c:501:28: note: remove extraneous parentheses around the comparison to silence this warning
if((track_cond == nCond)) {
˜ ^ ˜
simulatorTN.c:501:28: note: use '=' to turn this equality comparison into an assignment
if((track_cond == nCond)) {
^˜
=
2 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CellNOptR.so getFit.o simulatorT1.o simulatorTN.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/CellNOptR.buildbin-libdir/CellNOptR/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CellNOptR)
>>>>>>>
>>>>>>> FIXING LINKS FOR CellNOptR.buildbin-libdir/CellNOptR/libs//CellNOptR.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "CellNOptR.buildbin-libdir/CellNOptR/libs//CellNOptR.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "CellNOptR.buildbin-libdir/CellNOptR/libs//CellNOptR.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "CellNOptR.buildbin-libdir/CellNOptR/libs//CellNOptR.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "CellNOptR.buildbin-libdir/CellNOptR/libs//CellNOptR.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "CellNOptR.buildbin-libdir/CellNOptR/libs//CellNOptR.so"