BioC 3.4: CHECK report for MultiAssayExperiment on moscato1

Package: MultiAssayExperiment

Version: 0.101.49

Command: rm -rf MultiAssayExperiment.buildbin-libdir MultiAssayExperiment.Rcheck && mkdir MultiAssayExperiment.buildbin-libdir MultiAssayExperiment.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MultiAssayExperiment.buildbin-libdir MultiAssayExperiment_0.101.49.tar.gz >MultiAssayExperiment.Rcheck\00install.out 2>&1 && cp MultiAssayExperiment.Rcheck\00install.out MultiAssayExperiment-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=MultiAssayExperiment.buildbin-libdir --install="check:MultiAssayExperiment-install.out" --force-multiarch --no-vignettes --timings MultiAssayExperiment_0.101.49.tar.gz

StartedAt: 2016-09-20 12:43:49 -0700 (Tue, 20 Sep 2016)

EndedAt: 2016-09-20 12:47:14 -0700 (Tue, 20 Sep 2016)

EllapsedTime: 204.5 seconds

RetCode: 0

Status:  OK

CheckDir: MultiAssayExperiment.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf MultiAssayExperiment.buildbin-libdir MultiAssayExperiment.Rcheck && mkdir MultiAssayExperiment.buildbin-libdir MultiAssayExperiment.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MultiAssayExperiment.buildbin-libdir MultiAssayExperiment_0.101.49.tar.gz >MultiAssayExperiment.Rcheck\00install.out 2>&1 && cp MultiAssayExperiment.Rcheck\00install.out MultiAssayExperiment-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=MultiAssayExperiment.buildbin-libdir --install="check:MultiAssayExperiment-install.out" --force-multiarch --no-vignettes --timings MultiAssayExperiment_0.101.49.tar.gz
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* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/MultiAssayExperiment.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MultiAssayExperiment/DESCRIPTION' ... OK
* this is package 'MultiAssayExperiment' version '0.101.49'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MultiAssayExperiment' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'MultiAssayExperiment' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'MultiAssayExperiment' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MultiAssayExperiment' as MultiAssayExperiment_0.101.49.zip
* DONE (MultiAssayExperiment)

name	user	system	elapsed
API	0	0	0
ExperimentList-class	0.01	0.00	0.01
ExperimentList	0.11	0.00	0.11
MultiAssayExperiment-class	0.13	0.00	0.12
MultiAssayExperiment	0.64	0.03	0.88
PrepMultiAssay	0.58	0.02	0.60
RangedRaggedAssay	0.12	0.00	0.13
assay-RangedRaggedAssay-ANY-method	0.28	0.02	0.30
experiments-set	0.39	0.01	0.40
experiments	0.41	0.02	0.43
getHits	0.87	0.01	0.99
hasAssay	0	0	0
mapToList	0.07	0.00	0.06
sampleMap-set	0.40	0.00	0.41
sampleMap	0.02	0.00	0.01
subsetByAssay	0.59	0.00	0.60
subsetByColumn	0.72	0.00	0.71
subsetByRow	0.68	0.00	0.69

name	user	system	elapsed
API	0	0	0
ExperimentList-class	0.02	0.00	0.02
ExperimentList	0.09	0.00	0.09
MultiAssayExperiment-class	0.13	0.00	0.13
MultiAssayExperiment	0.68	0.01	0.70
PrepMultiAssay	1.14	0.03	1.17
RangedRaggedAssay	0.26	0.00	0.26
assay-RangedRaggedAssay-ANY-method	0.38	0.02	0.48
experiments-set	0.46	0.00	0.47
experiments	0.46	0.03	0.49
getHits	1.01	0.05	1.06
hasAssay	0	0	0
mapToList	0.08	0.00	0.08
sampleMap-set	0.47	0.01	0.48
sampleMap	0.03	0.00	0.03
subsetByAssay	0.79	0.00	0.80
subsetByColumn	0.89	0.00	0.88
subsetByRow	0.86	0.00	0.86