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### Running command:
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###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:scRNAseq.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings scRNAseq_2.18.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.19-data-experiment/meat/scRNAseq.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.5 LTS
* using session charset: UTF-8
* checking for file ‘scRNAseq/DESCRIPTION’ ... OK
* this is package ‘scRNAseq’ version ‘2.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘scRNAseq’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                           user system elapsed
BhaduriOrganoidData      62.910 11.943  75.151
ZeiselNervousData        44.107 10.052  55.832
JessaBrainData           36.345  6.997  44.729
BacherTCellData          34.621  6.769  42.367
ErnstSpermatogenesisData 27.220  6.721  35.237
HeOrganAtlasData         24.055  7.184  31.881
ZhaoImmuneLiverData      18.610  5.678  25.034
GiladiHSCData            15.548  4.225  20.320
ZilionisLungData         14.311  2.673  17.336
StoeckiusHashingData     12.515  2.275  16.550
AztekinTailData           9.469  1.093  10.786
CampbellBrainData         6.565  2.435   9.250
KotliarovPBMCData         6.790  1.598   8.649
BachMammaryData           7.288  0.955   9.558
PaulHSCData               6.024  1.893   7.984
NestorowaHSCData          6.497  1.410   8.359
LunSpikeInData            6.556  1.256   8.370
ShekharRetinaData         5.982  1.194   7.373
MacoskoRetinaData         5.335  1.277   6.843
MessmerESCData            4.669  1.196   6.368
LedergorMyelomaData       4.143  0.920   5.243
KolodziejczykESCData      3.884  0.799   5.246
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.19-data-experiment/meat/scRNAseq.Rcheck/00check.log’
for details.