##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data methodical
###
##############################################################################
##############################################################################


* checking for file ‘methodical/DESCRIPTION’ ... OK
* preparing ‘methodical’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘calculating_methylation_transcription_correlations.Rmd’ using rmarkdown
2024-10-17 04:13:38.560 R[75350:389441684] XType: Using static font registry.
--- finished re-building ‘calculating_methylation_transcription_correlations.Rmd’

--- re-building ‘identifying_tmrs.Rmd’ using rmarkdown
--- finished re-building ‘identifying_tmrs.Rmd’

--- re-building ‘working_with_meth_rses.Rmd’ using rmarkdown

Quitting from lines 184-199 [unnamed-chunk-7] (working_with_meth_rses.Rmd)
Error: processing vignette 'working_with_meth_rses.Rmd' failed with diagnostics:
failed to load resource
  name: AH99003
  title: UCSC RepeatMasker annotations (Sep2021) for Human (hg38)
  reason: unknown input format
--- failed re-building ‘working_with_meth_rses.Rmd’

SUMMARY: processing the following file failed:
  ‘working_with_meth_rses.Rmd’

Error: Vignette re-building failed.
Execution halted