############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data genefilter ### ############################################################################## ############################################################################## * checking for file ‘genefilter/DESCRIPTION’ ... OK * preparing ‘genefilter’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘howtogenefilter.Rmd’ using rmarkdown --- finished re-building ‘howtogenefilter.Rmd’ --- re-building ‘howtogenefinder.Rmd’ using rmarkdown [WARNING] Could not parse YAML metadata at line 22 column 1: :2:72: Unexpected ' ' [WARNING] This document format requires a nonempty element. Please specify either 'title' or 'pagetitle' in the metadata, e.g. by using --metadata pagetitle="..." on the command line. Falling back to 'howtogenefinder.knit' --- finished re-building ‘howtogenefinder.Rmd’ --- re-building ‘independent_filtering_plots.Rnw’ using knitr 2024-06-09 16:45:10.588 R[12500:26954300] XType: com.apple.fonts is not accessible. 2024-06-09 16:45:10.588 R[12500:26954300] XType: XTFontStaticRegistry is enabled. Error: processing vignette 'independent_filtering_plots.Rnw' failed with diagnostics: Running 'texi2dvi' on 'independent_filtering_plots.tex' failed. LaTeX errors: ! Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ! Emergency stop. ... l.78 ...}{rgb}{0.941, 0.941, 0.941}\color{fgcolor} \begin{kframe} ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘independent_filtering_plots.Rnw’ SUMMARY: processing the following file failed: ‘independent_filtering_plots.Rnw’ Error: Vignette re-building failed. Execution halted