############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GenomicDataCommons ### ############################################################################## ############################################################################## * checking for file ‘GenomicDataCommons/DESCRIPTION’ ... OK * preparing ‘GenomicDataCommons’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘overview.Rmd’ using rmarkdown 2024-10-17 01:06:15.847 R[44974:388946071] XType: Using static font registry. Quitting from lines 734-746 [filesRNAseqGeneGBM] (overview.Rmd) Error: processing vignette 'overview.Rmd' failed with diagnostics: No method asJSON S3 class: formula --- failed re-building ‘overview.Rmd’ --- re-building ‘questions-and-answers.Rmd’ using rmarkdown --- finished re-building ‘questions-and-answers.Rmd’ --- re-building ‘somatic_mutations.Rmd’ using rmarkdown --- finished re-building ‘somatic_mutations.Rmd’ SUMMARY: processing the following file failed: ‘overview.Rmd’ Error: Vignette re-building failed. Execution halted