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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data TCGAbiolinks
###
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* checking for file ‘TCGAbiolinks/DESCRIPTION’ ... OK
* preparing ‘TCGAbiolinks’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘analysis.Rmd’ using rmarkdown
Error: processing vignette 'analysis.Rmd' failed with diagnostics:
pandoc document conversion failed with error 10
--- failed re-building ‘analysis.Rmd’

--- re-building ‘casestudy.Rmd’ using rmarkdown
--- finished re-building ‘casestudy.Rmd’

--- re-building ‘classifiers.Rmd’ using rmarkdown
--- finished re-building ‘classifiers.Rmd’

--- re-building ‘clinical.Rmd’ using rmarkdown
--- finished re-building ‘clinical.Rmd’

--- re-building ‘download_prepare.Rmd’ using rmarkdown
--- finished re-building ‘download_prepare.Rmd’

--- re-building ‘extension.Rmd’ using rmarkdown
--- finished re-building ‘extension.Rmd’

--- re-building ‘index.Rmd’ using rmarkdown
[WARNING] Could not fetch resource https://maxcdn.bootstrapcdn.com/font-awesome/4.4.0/fonts/fontawesome-webfont.svg?v=4.4.0#fontawesomeregular: HttpExceptionRequest Request {
    host                 = "maxcdn.bootstrapcdn.com"
    port                 = 443
    secure               = True
    requestHeaders       = []
    path                 = "/font-awesome/4.4.0/fonts/fontawesome-webfont.svg"
    queryString          = "?v=4.4.0"
    method               = "GET"
    proxy                = Nothing
    rawBody              = False
    redirectCount        = 10
    responseTimeout      = ResponseTimeoutDefault
    requestVersion       = HTTP/1.1
    proxySecureMode      = ProxySecureWithConnect
  }
   (InternalException (HandshakeFailed (Error_Protocol ("certificate rejected: [InvalidSignature SignatureInvalid]",True,CertificateUnknown))))
--- finished re-building ‘index.Rmd’

--- re-building ‘mutation.Rmd’ using rmarkdown
2024-04-17 04:00:09.805 R[40787:450576097] XType: Using static font registry.
--- finished re-building ‘mutation.Rmd’

--- re-building ‘query.Rmd’ using rmarkdown
--- finished re-building ‘query.Rmd’

--- re-building ‘stemness_score.Rmd’ using rmarkdown
--- finished re-building ‘stemness_score.Rmd’

--- re-building ‘subtypes.Rmd’ using rmarkdown
--- finished re-building ‘subtypes.Rmd’

SUMMARY: processing the following file failed:
  ‘analysis.Rmd’

Error: Vignette re-building failed.
Execution halted