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### Running command:
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###   /home/biocbuild/R/R-4.3.1/bin/R CMD check --install=check:limma.install-out.txt --library=/home/biocbuild/R/R-4.3.1/site-library --no-vignettes --timings limma_3.58.1.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/limma.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘limma/DESCRIPTION’ ... OK
* this is package ‘limma’ version ‘3.58.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘limma’ can be installed ... OK
* used C compiler: ‘gcc (GCC) 10.3.1’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
alias2Symbol 6.712  0.283   7.029
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘limma-Tests.R’
  Comparing ‘limma-Tests.Rout’ to ‘limma-Tests.Rout.save’ ...504,509c504,509
<  Min.   :-5.88010   Min.   :-5.66985  
<  1st Qu.:-1.18497   1st Qu.:-1.57014  
<  Median :-0.21643   Median : 0.04823  
<  Mean   : 0.03489   Mean   :-0.05481  
<  3rd Qu.: 1.49638   3rd Qu.: 1.45113  
<  Max.   : 7.07506   Max.   : 6.19744  
---
>  Min.   :-5.8801   Min.   :-5.66985  
>  1st Qu.:-1.1850   1st Qu.:-1.57014  
>  Median :-0.2164   Median : 0.04823  
>  Mean   : 0.0349   Mean   :-0.05481  
>  3rd Qu.: 1.4964   3rd Qu.: 1.45113  
>  Max.   : 7.0751   Max.   : 6.19744  
520c520
< [1,] -1.1669589  4.5558123
---
> [1,] -1.1669590  4.5558123
535c535
< [1,] -1.1669589  4.5558123
---
> [1,] -1.1669590  4.5558123
871,872c871,872
< mu+alpha    0.3333333 3.333333e-01  1.232595e-32
< mu+beta    -0.3333333 1.232595e-32  3.333333e-01
---
> mu+alpha    0.3333333 3.333333e-01  1.110223e-16
> mu+beta    -0.3333333 1.110223e-16  3.333333e-01
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.18-bioc/meat/limma.Rcheck/00check.log’
for details.