############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL gaggle ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’ * installing *source* package ‘gaggle’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location onLoad -- libname: /home/biocbuild/bbs-3.18-bioc/R/site-library/00LOCK-gaggle/00new pkgname: gaggle path to jar: /home/biocbuild/bbs-3.18-bioc/R/site-library/00LOCK-gaggle/00new/gaggle/jars/gaggleRShell.jar script: gaggle.R $Revision: 4499 $ $Date: 2010-08-10 17:15:03 -0700 (Tue, 10 Aug 2010) $ os version: Linux jvm version: 11.0.22 You are using the wrong version of Java. Please see http://gaggle.systemsbiology.org/docs/html/java Warning: Package 'gaggle' is deprecated and will be removed from Bioconductor version 3.19 ** testing if installed package can be loaded from final location onLoad -- libname: /home/biocbuild/bbs-3.18-bioc/R/site-library pkgname: gaggle path to jar: /home/biocbuild/bbs-3.18-bioc/R/site-library/gaggle/jars/gaggleRShell.jar script: gaggle.R $Revision: 4499 $ $Date: 2010-08-10 17:15:03 -0700 (Tue, 10 Aug 2010) $ os version: Linux jvm version: 11.0.22 You are using the wrong version of Java. Please see http://gaggle.systemsbiology.org/docs/html/java Warning: Package 'gaggle' is deprecated and will be removed from Bioconductor version 3.19 ** testing if installed package keeps a record of temporary installation path * DONE (gaggle)