##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SummarizedBenchmark
###
##############################################################################
##############################################################################


* checking for file ‘SummarizedBenchmark/DESCRIPTION’ ... OK
* preparing ‘SummarizedBenchmark’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CaseStudy-RNAseqQuantification.Rmd’ using rmarkdown

Quitting from lines  at lines 243-268 [pcaPlot] (CaseStudy-RNAseqQuantification.Rmd)
Error: processing vignette 'CaseStudy-RNAseqQuantification.Rmd' failed with diagnostics:
The `legend.pos` theme element is not defined in the element hierarchy.
--- failed re-building ‘CaseStudy-RNAseqQuantification.Rmd’

--- re-building ‘CaseStudy-SingleCellSimulation.Rmd’ using rmarkdown
2024-04-15 22:28:26.751 R[88929:2535554465] XType: com.apple.fonts is not accessible.
2024-04-15 22:28:26.752 R[88929:2535554465] XType: XTFontStaticRegistry is enabled.
--- finished re-building ‘CaseStudy-SingleCellSimulation.Rmd’

--- re-building ‘Feature-ErrorHandling.Rmd’ using rmarkdown
--- finished re-building ‘Feature-ErrorHandling.Rmd’

--- re-building ‘Feature-Iterative.Rmd’ using rmarkdown
--- finished re-building ‘Feature-Iterative.Rmd’

--- re-building ‘Feature-Parallel.Rmd’ using rmarkdown
--- finished re-building ‘Feature-Parallel.Rmd’

--- re-building ‘SummarizedBenchmark-ClassDetails.Rmd’ using rmarkdown
--- finished re-building ‘SummarizedBenchmark-ClassDetails.Rmd’

--- re-building ‘SummarizedBenchmark-FullCaseStudy.Rmd’ using rmarkdown
--- finished re-building ‘SummarizedBenchmark-FullCaseStudy.Rmd’

--- re-building ‘SummarizedBenchmark-Introduction.Rmd’ using rmarkdown
--- finished re-building ‘SummarizedBenchmark-Introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘CaseStudy-RNAseqQuantification.Rmd’

Error: Vignette re-building failed.
Execution halted