############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.1/bin/R CMD build --keep-empty-dirs --no-resave-data SC3 ### ############################################################################## ############################################################################## * checking for file ‘SC3/DESCRIPTION’ ... OK * preparing ‘SC3’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘SC3.Rmd’ using rmarkdown starting worker pid=21928 on localhost:11050 at 05:42:10.000 starting worker pid=21927 on localhost:11050 at 05:42:10.003 starting worker pid=21929 on localhost:11050 at 05:42:10.014 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools starting worker pid=22448 on localhost:11050 at 05:42:25.922 starting worker pid=22446 on localhost:11050 at 05:42:25.923 starting worker pid=22444 on localhost:11050 at 05:42:25.926 starting worker pid=22447 on localhost:11050 at 05:42:25.927 starting worker pid=22449 on localhost:11050 at 05:42:25.927 starting worker pid=22445 on localhost:11050 at 05:42:25.928 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools starting worker pid=22630 on localhost:11050 at 05:42:37.487 starting worker pid=22621 on localhost:11050 at 05:42:37.525 starting worker pid=22625 on localhost:11050 at 05:42:37.534 starting worker pid=22631 on localhost:11050 at 05:42:37.538 starting worker pid=22633 on localhost:11050 at 05:42:37.544 starting worker pid=22624 on localhost:11050 at 05:42:37.547 starting worker pid=22650 on localhost:11050 at 05:42:37.551 starting worker pid=22622 on localhost:11050 at 05:42:37.553 starting worker pid=22640 on localhost:11050 at 05:42:37.553 starting worker pid=22645 on localhost:11050 at 05:42:37.562 starting worker pid=22647 on localhost:11050 at 05:42:37.562 starting worker pid=22623 on localhost:11050 at 05:42:37.563 starting worker pid=22634 on localhost:11050 at 05:42:37.565 starting worker pid=22649 on localhost:11050 at 05:42:37.569 starting worker pid=22644 on localhost:11050 at 05:42:37.572 starting worker pid=22642 on localhost:11050 at 05:42:37.572 starting worker pid=22627 on localhost:11050 at 05:42:37.574 starting worker pid=22639 on localhost:11050 at 05:42:37.576 starting worker pid=22632 on localhost:11050 at 05:42:37.577 starting worker pid=22626 on localhost:11050 at 05:42:37.577 starting worker pid=22651 on localhost:11050 at 05:42:37.582 starting worker pid=22637 on localhost:11050 at 05:42:37.582 starting worker pid=22638 on localhost:11050 at 05:42:37.591 starting worker pid=22648 on localhost:11050 at 05:42:37.597 starting worker pid=22629 on localhost:11050 at 05:42:37.607 starting worker pid=22646 on localhost:11050 at 05:42:37.616 starting worker pid=22641 on localhost:11050 at 05:42:37.618 starting worker pid=22628 on localhost:11050 at 05:42:37.637 starting worker pid=22643 on localhost:11050 at 05:42:37.637 starting worker pid=22636 on localhost:11050 at 05:42:37.648 starting worker pid=22635 on localhost:11050 at 05:42:37.651 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach loaded SC3 and set parent environment Loading required package: foreach loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: 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|===================================================================== | 99% | |======================================================================| 100%starting worker pid=23688 on localhost:11050 at 05:43:11.883 starting worker pid=23687 on localhost:11050 at 05:43:11.883 starting worker pid=23686 on localhost:11050 at 05:43:11.883 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools starting worker pid=23855 on localhost:11050 at 05:43:22.992 starting worker pid=23861 on localhost:11050 at 05:43:22.992 starting worker pid=23858 on localhost:11050 at 05:43:22.993 starting worker pid=23863 on localhost:11050 at 05:43:22.997 starting worker pid=23860 on localhost:11050 at 05:43:23.000 starting worker pid=23862 on localhost:11050 at 05:43:23.000 starting worker pid=23859 on localhost:11050 at 05:43:23.001 starting worker pid=23856 on localhost:11050 at 05:43:23.001 starting worker pid=23857 on localhost:11050 at 05:43:23.002 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools starting worker pid=25414 on localhost:11050 at 05:44:48.650 starting worker pid=25416 on localhost:11050 at 05:44:48.650 starting worker pid=25415 on localhost:11050 at 05:44:48.653 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools starting worker pid=25587 on localhost:11050 at 05:45:04.708 starting worker pid=25588 on localhost:11050 at 05:45:04.709 starting worker pid=25592 on localhost:11050 at 05:45:04.710 starting worker pid=25591 on localhost:11050 at 05:45:04.710 starting worker pid=25589 on localhost:11050 at 05:45:04.710 starting worker pid=25590 on localhost:11050 at 05:45:04.718 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools starting worker pid=25685 on localhost:11050 at 05:45:16.108 starting worker pid=25704 on localhost:11050 at 05:45:16.109 starting worker pid=25688 on localhost:11050 at 05:45:16.111 starting worker pid=25708 on localhost:11050 at 05:45:16.142 starting worker pid=25714 on localhost:11050 at 05:45:16.148 starting worker pid=25689 on localhost:11050 at 05:45:16.171 starting worker pid=25709 on localhost:11050 at 05:45:16.171 starting worker pid=25694 on localhost:11050 at 05:45:16.173 starting worker pid=25699 on localhost:11050 at 05:45:16.175 starting worker pid=25702 on localhost:11050 at 05:45:16.192 starting worker pid=25696 on localhost:11050 at 05:45:16.199 starting worker pid=25713 on localhost:11050 at 05:45:16.200 starting worker pid=25700 on localhost:11050 at 05:45:16.201 starting worker pid=25701 on localhost:11050 at 05:45:16.206 starting worker pid=25705 on localhost:11050 at 05:45:16.215 starting worker pid=25716 on localhost:11050 at 05:45:16.216 starting worker pid=25698 on localhost:11050 at 05:45:16.217 starting worker pid=25691 on localhost:11050 at 05:45:16.217 starting worker pid=25706 on localhost:11050 at 05:45:16.219 starting worker pid=25690 on localhost:11050 at 05:45:16.230 starting worker pid=25686 on localhost:11050 at 05:45:16.230 starting worker pid=25707 on localhost:11050 at 05:45:16.237 starting worker pid=25711 on localhost:11050 at 05:45:16.242 starting worker pid=25697 on localhost:11050 at 05:45:16.245 starting worker pid=25687 on localhost:11050 at 05:45:16.252 starting worker pid=25712 on localhost:11050 at 05:45:16.257 starting worker pid=25703 on localhost:11050 at 05:45:16.263 starting worker pid=25692 on localhost:11050 at 05:45:16.263 starting worker pid=25695 on localhost:11050 at 05:45:16.265 starting worker pid=25693 on localhost:11050 at 05:45:16.279 starting worker pid=25710 on localhost:11050 at 05:45:16.282 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3