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### Running command:
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###   F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:GenomicPlot.install-out.txt --library=F:\biocbuild\bbs-3.18-bioc\R\library --no-vignettes --timings GenomicPlot_1.0.8.tar.gz
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* using log directory 'F:/biocbuild/bbs-3.18-bioc/meat/GenomicPlot.Rcheck'
* using R version 4.3.3 (2024-02-29 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'GenomicPlot/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GenomicPlot' version '1.0.8'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GenomicPlot' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
get_targeted_genes: no visible binding for global variable '5'UTR'
get_targeted_genes: no visible binding for global variable '3'UTR'
plot_bam_correlation: no visible binding for global variable '.'
plot_peak_annotation: no visible binding for global variable '.'
Undefined global functions or variables:
  . 3'UTR 5'UTR
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                 user system elapsed
plot_start_end_with_random      19.09   0.48  213.25
plot_start_end                  12.88   0.24  110.86
plot_locus                      12.53   0.23   81.13
get_targeted_genes               9.91   0.17   10.50
plot_locus_with_random           8.69   0.22   80.51
plot_region                      8.47   0.17  108.76
plot_peak_annotation             8.37   0.12    8.78
get_txdb_features                7.83   0.24    8.17
plot_5parts_metagene             7.56   0.38  171.25
prepare_5parts_genomic_features  5.09   0.12    5.39
plot_bam_correlation             0.86   0.03   21.92
effective_size                   0.62   0.01   22.36
parallel_scoreMatrixBin          0.31   0.01   18.17
parallel_countOverlaps           0.25   0.00   22.28
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'test-plotFunctions.R'
  Running 'test-shortFunctions.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'F:/biocbuild/bbs-3.18-bioc/meat/GenomicPlot.Rcheck/00check.log'
for details.