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### Running command:
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###   /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL CellBarcode
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* installing to library ‘/home/biocbuild/R/R-4.3.1/site-library’
* installing *source* package ‘CellBarcode’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.3.1’
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c lib_10X_barcode.cpp -o lib_10X_barcode.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/arg.hpp:25,
                 from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/placeholders.hpp:24,
                 from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/iterator_range.hpp:13,
                 from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/as_literal.hpp:18,
                 from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string.hpp:19,
                 from lib_10X_barcode.cpp:10:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mem_fn.hpp:22,
                 from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/function/detail/prologue.hpp:18,
                 from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/function.hpp:30,
                 from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18,
                 from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string/find_iterator.hpp:24,
                 from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string/iter_find.hpp:27,
                 from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string/split.hpp:16,
                 from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string.hpp:23,
                 from lib_10X_barcode.cpp:10:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   48 | template<class T> T * get_pointer(std::auto_ptr<T> const& p)
      |                                        ^~~~~~~~
In file included from /usr/include/c++/10.3.1/bits/locale_conv.h:41,
                 from /usr/include/c++/10.3.1/locale:43,
                 from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string/classification.hpp:15,
                 from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string/trim.hpp:23,
                 from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string.hpp:19,
                 from lib_10X_barcode.cpp:10:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
lib_10X_barcode.cpp: In function ‘Rcpp::List parse_10x_sam(std::string, std::string, std::string, std::string)’:
lib_10X_barcode.cpp:79:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   79 |             for (int j=11; j<parts.size(); j++) {
      |                            ~^~~~~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c lib_clustering.cpp -o lib_clustering.o
lib_clustering.cpp: In function ‘int hamm_dist(std::string, std::string)’:
lib_clustering.cpp:59:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   59 |     for (int i=0; i < s1.length(); i++) {
      |                   ~~^~~~~~~~~~~~~
lib_clustering.cpp: In function ‘Rcpp::List seq_correct(std::vector<std::__cxx11::basic_string<char> >, Rcpp::IntegerVector, int, int, double, int, int, int, int)’:
lib_clustering.cpp:127:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  127 |     for (auto i=0; i<seq.size(); i++) {
      |                    ~^~~~~~~~~~~
lib_clustering.cpp:232:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::pair<std::__cxx11::basic_string<char>, int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  232 |     for (auto i=0; i<res.size(); i++) {
      |                    ~^~~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c lib_read_seq.cpp -o lib_read_seq.o
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.3.1/lib -L/usr/local/lib -o CellBarcode.so RcppExports.o lib_10X_barcode.o lib_clustering.o lib_read_seq.o -L/home/biocbuild/R/R-4.3.1/lib -lR
installing to /home/biocbuild/R/R-4.3.1/site-library/00LOCK-CellBarcode/00new/CellBarcode/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CellBarcode)