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### Running command:
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###   /home/biocbuild/R/R-4.3.1/bin/R CMD check --install=check:BindingSiteFinder.install-out.txt --library=/home/biocbuild/R/R-4.3.1/site-library --no-vignettes --timings BindingSiteFinder_2.0.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/BindingSiteFinder.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘BindingSiteFinder/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BindingSiteFinder’ version ‘2.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BindingSiteFinder’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘BindingSiteFinder-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: BSFind
> ### Title: RBP binding site definition for iCLIP data
> ### Aliases: BSFind
> 
> ### ** Examples
> 
> # load clip data
> files <- system.file("extdata", package="BindingSiteFinder")
> load(list.files(files, pattern = ".rda$", full.names = TRUE))
> # Load genes
> load(list.files(files, pattern = ".rds$", full.names = TRUE)[1])
> # load transcript regions
> load(list.files(files, pattern = ".rds$", full.names = TRUE)[2])
> BSFind(object = bds, bsSize = 9, anno.genes = gns,
+  anno.transcriptRegionList = regions, est.subsetChromosome = "chr22")
pureClipGlobalFilter...
estimateBsWidth...
Estimation at: 0%
8.7% (1701/19551) peaks overlap with multiple anno.genes in the given gene annotation. 
A single instance of each peak is kept. This is recommended. 
 
Estimation at: 10%
7.64% (1494/19551) peaks overlap with multiple anno.genes in the given gene annotation. 
A single instance of each peak is kept. This is recommended. 
 
Estimation at: 20%
6.79% (1327/19551) peaks overlap with multiple anno.genes in the given gene annotation. 
A single instance of each peak is kept. This is recommended. 
 
Estimation at: 30%
5.9% (1153/19551) peaks overlap with multiple anno.genes in the given gene annotation. 
A single instance of each peak is kept. This is recommended. 
 
Estimation at: 40%
5.02% (982/19551) peaks overlap with multiple anno.genes in the given gene annotation. 
A single instance of each peak is kept. This is recommended. 
 
Estimation at: 50%
4.18% (817/19551) peaks overlap with multiple anno.genes in the given gene annotation. 
A single instance of each peak is kept. This is recommended. 
 
Estimation at: 60%
3.31% (647/19551) peaks overlap with multiple anno.genes in the given gene annotation. 
A single instance of each peak is kept. This is recommended. 
 
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’/home/biocbuild/R/R-4.3.1/bin/BATCH: line 60: 414200 Killed                  ${R_HOME}/bin/R -f ${in} ${opts} ${R_BATCH_OPTIONS} > ${out} 2>&1

 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  Loading required package: S4Vectors
  
  Attaching package: 'S4Vectors'
  
  The following object is masked from 'package:utils':
  
      findMatches
  
  The following objects are masked from 'package:base':
  
      I, expand.grid, unname
  
  Loading required package: IRanges
  Loading required package: GenomeInfoDb
  > test_check("BindingSiteFinder")
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs
See
  ‘/home/biocbuild/bbs-3.18-bioc/meat/BindingSiteFinder.Rcheck/00check.log’
for details.