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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:peakPantheR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings peakPantheR_1.14.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/peakPantheR.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.6.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘peakPantheR/DESCRIPTION’ ... OK
* this is package ‘peakPantheR’ version ‘1.14.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘peakPantheR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                                          user system elapsed
peakPantheR_ROIStatistics                               16.109  0.232  23.837
peakPantheR_parallelAnnotation                          11.565  0.126  16.402
outputAnnotationDiagnostic-peakPantheRAnnotation-method 11.164  0.140  17.479
outputAnnotationResult-peakPantheRAnnotation-method     10.980  0.122  16.721
EICs-peakPantheRAnnotation-method                       10.368  0.431  16.495
retentionTimeCorrection-peakPantheRAnnotation-method     7.614  0.087  11.549
peakPantheR_singleFileSearch                             3.993  0.054   5.879
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  Error: Test failures
  In addition: Warning messages:
  1: In .Internal(gc(verbose, reset, full)) :
    closing unused connection 10 (/private/tmp/RtmpY4vfZZ/notValidXML.mzML)
  2: In .Internal(gc(verbose, reset, full)) :
    closing unused connection 9 (/private/tmp/RtmpY4vfZZ/notValidXML.mzML)
  3: In .Internal(gc(verbose, reset, full)) :
    closing unused connection 8 (/private/tmp/RtmpY4vfZZ/notValidXML.mzML)
  4: In .Internal(gc(verbose, reset, full)) :
    closing unused connection 7 (/private/tmp/RtmpY4vfZZ/notValidXML.mzML)
  5: In .Internal(gc(verbose, reset, full)) :
    closing unused connection 6 (/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/peakPantheR/extdata/test_fakemzML.mzML)
  6: In .Internal(gc(verbose, reset, full)) :
    closing unused connection 5 (/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/peakPantheR/extdata/test_fakemzML.mzML)
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR
See
  ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/peakPantheR.Rcheck/00check.log’
for details.