| Back to Mac ARM64 build report for BioC 3.17 |
|
This page was generated on 2023-10-20 09:38:07 -0400 (Fri, 20 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1339/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| multtest 2.56.0 (landing page) Katherine S. Pollard
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | OK | WARNINGS | OK |  | |||||||
|
To the developers/maintainers of the multtest package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: multtest |
| Version: 2.56.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL multtest |
| StartedAt: 2023-10-15 18:35:24 -0400 (Sun, 15 Oct 2023) |
| EndedAt: 2023-10-15 18:35:51 -0400 (Sun, 15 Oct 2023) |
| EllapsedTime: 26.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL multtest
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’
* installing *source* package ‘multtest’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSEDOUBLE -fPIC -falign-functions=64 -Wall -g -O2 -c Rpack.c -o Rpack.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSEDOUBLE -fPIC -falign-functions=64 -Wall -g -O2 -c VScount.c -o VScount.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSEDOUBLE -fPIC -falign-functions=64 -Wall -g -O2 -c block_sampling_fixed.c -o block_sampling_fixed.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSEDOUBLE -fPIC -falign-functions=64 -Wall -g -O2 -c bootloop.c -o bootloop.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSEDOUBLE -fPIC -falign-functions=64 -Wall -g -O2 -c mt.c -o mt.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSEDOUBLE -fPIC -falign-functions=64 -Wall -g -O2 -c pairt_sampling.c -o pairt_sampling.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSEDOUBLE -fPIC -falign-functions=64 -Wall -g -O2 -c pairt_sampling_fixed.c -o pairt_sampling_fixed.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSEDOUBLE -fPIC -falign-functions=64 -Wall -g -O2 -c random.c -o random.o
random.c:48:6: warning: absolute value function 'abs' given an argument of type 'long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value]
z1=abs(seed); /*setting the seed to z1 and initialize it*/
^
random.c:48:6: note: use function 'labs' instead
z1=abs(seed); /*setting the seed to z1 and initialize it*/
^~~
labs
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSEDOUBLE -fPIC -falign-functions=64 -Wall -g -O2 -c sampling.c -o sampling.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSEDOUBLE -fPIC -falign-functions=64 -Wall -g -O2 -c sampling_fixed.c -o sampling_fixed.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSEDOUBLE -fPIC -falign-functions=64 -Wall -g -O2 -c stat_func.c -o stat_func.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSEDOUBLE -fPIC -falign-functions=64 -Wall -g -O2 -c stat_order.c -o stat_order.o
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o multtest.so Rpack.o VScount.o block_sampling_fixed.o bootloop.o mt.o pairt_sampling.o pairt_sampling_fixed.o random.o sampling.o sampling_fixed.o stat_func.o stat_order.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/00LOCK-multtest/00new/multtest/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (multtest)