############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data geva ### ############################################################################## ############################################################################## * checking for file ‘geva/DESCRIPTION’ ... OK * preparing ‘geva’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘geva.Rmd’ using rmarkdown Warning in Sys.setlocale("LC_TIME", "English_United States") : OS reports request to set locale to "English_United States" cannot be honored sh: /Library/TeX/texbin/biber: Bad CPU type in executable Warning: LaTeX Warning: Citation 'smyth2005limma' on page 2 undefined on input line 165. Warning: LaTeX Warning: Citation 'love2014moderated' on page 2 undefined on input line 1 Warning: 66. Warning: LaTeX Warning: Citation 'nunes2018gene' on page 2 undefined on input line 169. Warning: LaTeX Warning: Citation 'kallio2011chipster' on page 2 undefined on input line Warning: 170. Warning: Package longtable Warning: Column widths have changed Warning: (longtable) in table 1 on input line 903. Warning: Package longtable Warning: Column widths have changed Warning: (longtable) in table 2 on input line 942. Warning: LaTeX Warning: Empty bibliography on input line 993. Warning: Package longtable Warning: Table widths have changed. Rerun LaTeX. Warning: LaTeX Warning: There were undefined references. Warning: LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Warning: Package biblatex Warning: Please (re)run Biber on the file: Warning: (biblatex) geva Warning: (biblatex) and rerun LaTeX afterwards. Error: processing vignette 'geva.Rmd' failed with diagnostics: Failed to build the bibliography via biber --- failed re-building ‘geva.Rmd’ SUMMARY: processing the following file failed: ‘geva.Rmd’ Error: Vignette re-building failed. Execution halted