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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:EWCE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings EWCE_1.8.2.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/EWCE.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.6.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘EWCE/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘EWCE’ version ‘1.8.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘EWCE’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                             user system elapsed
controlled_geneset_enrichment              39.097  0.937  60.069
generate_bootstrap_plots                   29.188  0.677  46.045
merged_ewce                                24.947  0.823  39.832
generate_bootstrap_plots_for_transcriptome 21.903  0.715  32.383
filter_nonorthologs                        20.172  0.455  31.575
filter_genes_without_1to1_homolog          19.496  0.433  30.791
bootstrap_enrichment_test                  15.428  0.457  24.577
ewce_expression_data                       15.345  0.486  24.160
check_ewce_genelist_inputs                 13.780  0.409  27.999
add_res_to_merging_list                    11.175  1.025  21.918
sct_normalize                              11.012  0.502  24.076
merge_ctd                                  10.994  0.408  17.616
standardise_ctd                            10.864  0.269  16.849
filter_ctd_genes                           10.727  0.252  16.249
merge_sce                                   8.303  0.204  13.231
bin_specificity_into_quantiles              7.579  0.210  12.014
fix_bad_mgi_symbols                         7.189  0.505  12.035
bin_columns_into_quantiles                  7.333  0.169  10.840
ctd_to_sce                                  7.278  0.179  10.737
plot_ctd                                    7.282  0.175  11.546
generate_celltype_data                      4.729  0.303   7.821
drop_uninformative_genes                    4.071  0.301   6.819
get_celltype_table                          3.562  0.271   5.966
merge_two_expfiles                          3.380  0.289   5.693
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK